Variant report

Variant	rs181139839
Chromosome Location	chr1:165798667-165798668
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBP	chr1:165797407-165799044	Hela-S3	cervix:	n/a	n/a
2	TBP	chr1:165796682-165798882	H1-hESC	embryonic stem cell:	n/a	n/a
3	MXI1	chr1:165795790-165799461	SK-N-SH	brain:	n/a	n/a
4	RAD21	chr1:165796693-165798782	IMR90	lung:	n/a	chr1:165797262-165797276 chr1:165796971-165796985
5	TAF1	chr1:165796552-165798793	H1-hESC	embryonic stem cell:	n/a	n/a
6	MAX	chr1:165796762-165798850	K562	blood:	n/a	chr1:165797265-165797275 chr1:165797265-165797274 chr1:165797265-165797272
7	ZNF263	chr1:165796775-165798907	HEK293-T-REx	kidney:	n/a	chr1:165797048-165797057 chr1:165798757-165798766
8	CHD1	chr1:165796796-165798733	H1-hESC	embryonic stem cell:	n/a	chr1:165797014-165797024 chr1:165797585-165797595 chr1:165797665-165797675
9	MAX	chr1:165796628-165798870	Hela-S3	cervix:	n/a	chr1:165797265-165797275 chr1:165797265-165797274 chr1:165797265-165797272
10	MXI1	chr1:165796090-165799083	IMR90	lung:	n/a	n/a
11	STAT3	chr1:165798635-165798691	MCF10A-Er-Src	breast:	n/a	n/a
12	POLR2A	chr1:165796642-165798967	GM12891	blood:	n/a	n/a
13	CUX1	chr1:165797760-165799023	K562	blood:	n/a	n/a
14	REST	chr1:165796661-165798808	HL-60	blood:	n/a	chr1:165797611-165797624 chr1:165797587-165797600 chr1:165797285-165797295 chr1:165797599-165797612
15	MYC	chr1:165796227-165798863	K562	blood:	n/a	chr1:165797265-165797275 chr1:165797265-165797274 chr1:165797265-165797272
16	UBTF	chr1:165796472-165798820	K562	blood:	n/a	n/a
17	TBL1XR1	chr1:165796917-165799236	K562	blood:	n/a	n/a
18	ZNF384	chr1:165796767-165798888	K562	blood:	n/a	chr1:165798013-165798021
19	MAX	chr1:165796689-165798669	Hela-S3	cervix:	n/a	chr1:165797265-165797275 chr1:165797265-165797274 chr1:165797265-165797272
20	POLR2A	chr1:165798539-165798761	H1-hESC	embryonic stem cell:	n/a	n/a
21	POLR2A	chr1:165796689-165799100	HepG2	liver:	n/a	n/a
22	POLR2A	chr1:165796685-165798767	GM12878	blood:	n/a	n/a
23	POLR2A	chr1:165796645-165799245	MCF10A-Er-Src	breast:	n/a	n/a
24	POLR2A	chr1:165796687-165798776	K562	blood:	n/a	n/a
25	POLR2A	chr1:165796748-165798992	PBDE	blood:	n/a	n/a
26	MYC	chr1:165796697-165798821	MCF10A-Er-Src	breast:	n/a	chr1:165797265-165797275 chr1:165797265-165797274 chr1:165797265-165797272
27	HCFC1	chr1:165796510-165798726	K562	blood:	n/a	n/a
28	MAX	chr1:165796280-165798705	A549	lung:	n/a	chr1:165797265-165797275 chr1:165797265-165797274 chr1:165797265-165797272
29	IRF1	chr1:165796469-165799244	K562	blood:	n/a	chr1:165797613-165797627 chr1:165798461-165798475 chr1:165798553-165798564
30	MXI1	chr1:165796743-165798965	Hela-S3	cervix:	n/a	n/a
31	POLR2A	chr1:165796639-165799261	GM12878	blood:	n/a	n/a
32	RCOR1	chr1:165796312-165798730	Hela-S3	cervix:	n/a	n/a
33	POLR2A	chr1:165796647-165799073	K562	blood:	n/a	n/a
34	UBTF	chr1:165796625-165798802	K562	blood:	n/a	n/a
35	TBP	chr1:165796661-165799032	K562	blood:	n/a	n/a
36	MAX	chr1:165796473-165798730	K562	blood:	n/a	chr1:165797265-165797275 chr1:165797265-165797274 chr1:165797265-165797272
37	MYC	chr1:165796283-165799081	MCF10A-Er-Src	breast:	n/a	chr1:165797265-165797275 chr1:165797265-165797274 chr1:165797265-165797272
38	GATA1	chr1:165796191-165799199	PBDE	blood:	n/a	chr1:165796537-165796544 chr1:165796555-165796565 chr1:165796530-165796551 chr1:165796537-165796544 chr1:165796537-165796544 chr1:165796268-165796278
39	POLR2A	chr1:165796616-165798815	GM12892	blood:	n/a	n/a
40	NR2F2	chr1:165797255-165798966	K562	blood:	n/a	n/a
41	POLR2A	chr1:165796744-165798718	GM12878	blood:	n/a	n/a
42	HEY1	chr1:165796685-165799262	K562	blood:	n/a	chr1:165797282-165797297 chr1:165797294-165797309 chr1:165796793-165796808 chr1:165797609-165797624 chr1:165797010-165797025 chr1:165797590-165797605 chr1:165797178-165797193 chr1:165797231-165797246
43	MYC	chr1:165796624-165798811	A549	lung:	n/a	chr1:165797265-165797275 chr1:165797265-165797274 chr1:165797265-165797272
44	TBL1XR1	chr1:165796908-165798918	K562	blood:	n/a	n/a
45	PML	chr1:165796572-165798854	GM12878	blood:	n/a	n/a
46	MAX	chr1:165796629-165799023	NB4	blood:	n/a	chr1:165797265-165797275 chr1:165797265-165797274 chr1:165797265-165797272
47	EP300	chr1:165796816-165798892	K562	blood:	n/a	chr1:165798210-165798226 chr1:165796962-165796978 chr1:165797231-165797247 chr1:165797232-165797241 chr1:165796966-165796982 chr1:165797007-165797016 chr1:165797605-165797621
48	REST	chr1:165795832-165798785	H1-neurons	neurons:	n/a	chr1:165797611-165797624 chr1:165797587-165797600 chr1:165797285-165797295 chr1:165797599-165797612
49	MYC	chr1:165796445-165798827	K562	blood:	n/a	chr1:165797265-165797275 chr1:165797265-165797274 chr1:165797265-165797272
50	ELK1	chr1:165798662-165798878	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:165685761..165688091-chr1:165797394..165800120,2	K562	blood:
2	chr1:165701898..165704747-chr1:165797455..165798967,2	K562	blood:
3	chr1:165710113..165712004-chr1:165797069..165798776,2	K562	blood:
4	chr1:165798053..165799867-chr1:165811993..165814835,2	MCF-7	breast:
5	chr1:165735886..165744990-chr1:165791702..165805629,42	K562	blood:
6	chr1:165666837..165669027-chr1:165796687..165798880,2	MCF-7	breast:
7	chr1:165699126..165701487-chr1:165797315..165798954,2	K562	blood:
8	chr1:165797467..165799152-chr1:165835828..165838379,2	MCF-7	breast:
9	chr1:165741744..165743826-chr1:165797591..165799642,2	MCF-7	breast:
10	chr1:165667556..165669480-chr1:165798614..165800246,2	K562	blood:
11	chr1:165778822..165780861-chr1:165797146..165799667,2	MCF-7	breast:
12	chr1:165735066..165739781-chr1:165794447..165799093,13	MCF-7	breast:
13	chr1:165797029..165799386-chr1:165863557..165867019,3	K562	blood:
14	chr1:165797895..165798858-chr1:210546984..210547752,2	Hela-S3	cervix:
15	chr1:165797726..165798688-chr9:140135624..140136134,2	Hela-S3	cervix:
16	chr1:165797327..165800051-chr1:165876668..165879627,3	MCF-7	breast:
17	chr1:165733730..165736417-chr1:165798667..165800425,2	K562	blood:
18	chr1:165736117..165742504-chr1:165795129..165799551,11	MCF-7	breast:
19	chr1:165797906..165798776-chr17:43225882..43226503,2	Hela-S3	cervix:
20	chr1:165598807..165601582-chr1:165797127..165800019,4	K562	blood:
21	chr1:165738181..165738790-chr1:165797712..165798704,2	Hela-S3	cervix:
22	chr1:165795260..165799386-chr1:165863983..165867487,4	K562	blood:
23	chr1:165736523..165741866-chr1:165791420..165802380,26	K562	blood:

Variant related genes	Relation type
TMCO1	TF binding region
ENSG00000143149	Chromatin interaction
ENSG00000200972	Chromatin interaction
ENSG00000143198	Chromatin interaction
ENSG00000143183	Chromatin interaction
ENSG00000224358	Chromatin interaction
ENSG00000143179	Chromatin interaction
ENSG00000215838	Chromatin interaction
ENSG00000188229	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756102	chr1:165652342-165877342	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1011720	chr1:165669589-165802516	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv517792	chr1:165785503-165811729	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases
4	esv2830094	chr1:165785503-165840411	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases
5	nsv818544	chr1:165797966-165811729	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
6	nsv548097	chr1:165797966-165825166	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165796000-165798800	Active TSS	Rectal Mucosa Donor 31	rectum
2	chr1:165796000-165799200	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr1:165796200-165798800	Active TSS	Aorta	Aorta
4	chr1:165796200-165798800	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr1:165796200-165798800	Active TSS	NHDF-Ad	bronchial
6	chr1:165796200-165799000	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr1:165796200-165799000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr1:165796200-165799200	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr1:165796400-165798800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr1:165796400-165798800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:165796400-165798800	Active TSS	Fetal Kidney	kidney
12	chr1:165796400-165798800	Active TSS	Ovary	ovary
13	chr1:165796400-165799000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:165796400-165799000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:165796400-165799000	Active TSS	Fetal Intestine Large	intestine
16	chr1:165796400-165799200	Active TSS	H9 Cell Line	embryonic stem cell
17	chr1:165796400-165799200	Active TSS	GM12878-XiMat	blood
18	chr1:165796400-165799400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:165796400-165799400	Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr1:165796400-165799400	Active TSS	HSMMtube	muscle
21	chr1:165796400-165800000	Active TSS	Psoas Muscle	Psoas
22	chr1:165796600-165798800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr1:165796600-165798800	Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr1:165796600-165798800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr1:165796600-165798800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
26	chr1:165796600-165798800	Active TSS	Muscle Satellite Cultured Cells	--
27	chr1:165796600-165798800	Active TSS	Esophagus	oesophagus
28	chr1:165796600-165798800	Active TSS	Hela-S3	cervix
29	chr1:165796600-165798800	Active TSS	HMEC	breast
30	chr1:165796600-165798800	Active TSS	HSMM	muscle
31	chr1:165796600-165798800	Active TSS	K562	blood
32	chr1:165796600-165799000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr1:165796600-165799000	Active TSS	Fetal Intestine Small	intestine
34	chr1:165796600-165799000	Active TSS	Fetal Stomach	stomach
35	chr1:165796600-165799200	Active TSS	H1 Cell Line	embryonic stem cell
36	chr1:165796600-165799200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr1:165796600-165799200	Active TSS	HUES64 Cell Line	embryonic stem cell
38	chr1:165796600-165799200	Active TSS	A549	lung
39	chr1:165796600-165799400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr1:165796600-165799400	Active TSS	NHLF	lung
41	chr1:165796800-165798800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr1:165796800-165798800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr1:165796800-165798800	Active TSS	Gastric	stomach
44	chr1:165797400-165799000	Active TSS	Fetal Brain Male	brain
45	chr1:165797400-165799200	Flanking Active TSS	Primary hematopoietic stem cells	blood
46	chr1:165797600-165798800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
47	chr1:165797600-165798800	Bivalent/Poised TSS	HepG2	liver
48	chr1:165797800-165798800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
49	chr1:165797800-165798800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr1:165797800-165798800	Flanking Active TSS	Liver	Liver

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