The 2.0 version of rSNPBase
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Variant report
Variant
rs181201034
Chromosome Location
chr11:58130437-58130438
allele
A/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:1)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
CEBPB
chr11:58130366-58130626
HepG2
liver:
n/a
chr11:58130516-58130527
No data
No data
No data
No data
No data
Variant related genes
Relation type
OR5B17
TF binding region
Extended variants information (count: 2 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv1054205
chr11:57544264-58358509
Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh
TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site
67 gene(s)
inside rSNPs
diseases
2
nsv517849
chr11:58129053-58264181
Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS
TF binding regionCpG islandChromatin interactive region
6 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links