Variant report

Variant	rs1812358
Chromosome Location	chr13:86491939-86491940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1330037	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1330038	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1330039	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1330040	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1330041	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1411304	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1411305	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1411306	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1981163	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1981164	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4294705	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4294706	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4468496	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7335712	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7492057	0.84[AMR][1000 genomes]
rs9285339	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs944164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9531849	0.82[ASN][1000 genomes]
rs9531858	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9531859	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9531860	0.81[EUR][1000 genomes]
rs9531861	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9531862	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9531863	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9531865	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9531882	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9531885	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9531890	0.83[AMR][1000 genomes]
rs9547386	0.81[ASN][1000 genomes]
rs9547388	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9547389	0.82[ASN][1000 genomes]
rs9547390	0.82[ASN][1000 genomes]
rs9547398	0.86[EUR][1000 genomes]
rs9547399	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9547401	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9547402	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9547403	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9547404	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9547405	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9547406	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9547407	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9547408	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9547409	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9547427	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9547428	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9547437	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9547441	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9547458	0.81[AMR][1000 genomes]
rs9566110	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9566111	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9575982	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900734	chr13:86415632-86911159	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv900735	chr13:86426757-86545903	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900736	chr13:86429834-86529275	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv900737	chr13:86429834-86639464	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv456053	chr13:86448054-86551371	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv562610	chr13:86448054-86551371	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1050020	chr13:86449037-86499673	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	nsv900738	chr13:86449302-86628241	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv900739	chr13:86449302-86736910	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv900740	chr13:86449302-86911159	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv900741	chr13:86461429-86959695	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv524758	chr13:86463135-86568584	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv900742	chr13:86463135-86618098	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv900743	chr13:86477773-86581867	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86491600-86493000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:86491800-86492000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell

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