Variant report

Variant	rs181258667
Chromosome Location	chr3:52931007-52931008
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762328	chr3:52774884-53002150	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3446915	chr3:52786850-53049217	Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3339338	chr3:52930462-52933260	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52929600-52931200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
2	chr3:52929600-52931200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr3:52929600-52931200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr3:52929800-52931200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
5	chr3:52929800-52931200	Flanking Active TSS	Fetal Thymus	thymus
6	chr3:52929800-52931200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
7	chr3:52929800-52931400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:52929800-52932200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:52929800-52932200	Flanking Active TSS	Primary hematopoietic stem cells	blood
10	chr3:52930000-52931200	Flanking Active TSS	Brain Substantia Nigra	brain
11	chr3:52930000-52931400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr3:52930000-52931400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
13	chr3:52930000-52932000	Active TSS	H9 Cell Line	embryonic stem cell
14	chr3:52930000-52932200	Active TSS	HUES64 Cell Line	embryonic stem cell
15	chr3:52930000-52932200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:52930200-52931200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
17	chr3:52930200-52931200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:52930200-52931200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
19	chr3:52930200-52931200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:52930200-52931200	Flanking Active TSS	Fetal Brain Female	brain
21	chr3:52930200-52931200	Flanking Active TSS	Stomach Smooth Muscle	stomach
22	chr3:52930200-52931200	Flanking Active TSS	Dnd41	blood
23	chr3:52930200-52931400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
24	chr3:52930200-52931400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr3:52930200-52932000	Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr3:52930200-52932000	Active TSS	Right Atrium	heart
27	chr3:52930200-52932200	Active TSS	HUES48 Cell Line	embryonic stem cell
28	chr3:52930200-52932200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr3:52930200-52932200	Active TSS	GM12878-XiMat	blood
30	chr3:52930400-52931200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr3:52930400-52931200	Flanking Active TSS	Primary B cells from peripheral blood	blood
32	chr3:52930400-52931200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
33	chr3:52930400-52931200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
34	chr3:52930400-52931200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr3:52930400-52931200	Flanking Active TSS	Fetal Intestine Small	intestine
36	chr3:52930400-52931200	Flanking Active TSS	Fetal Muscle Leg	muscle
37	chr3:52930400-52931200	Flanking Active TSS	Hela-S3	cervix
38	chr3:52930400-52931200	Flanking Active TSS	Osteobl	bone
39	chr3:52930400-52931400	Flanking Active TSS	Brain Germinal Matrix	brain
40	chr3:52930400-52931800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
41	chr3:52930400-52931800	Active TSS	HepG2	liver
42	chr3:52930400-52932000	Active TSS	ES-I3 Cell Line	embryonic stem cell
43	chr3:52930400-52932000	Active TSS	iPS-15b Cell Line	embryonic stem cell
44	chr3:52930400-52932000	Active TSS	iPS-20b Cell Line	embryonic stem cell
45	chr3:52930400-52932000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr3:52930400-52932000	Active TSS	Aorta	Aorta
47	chr3:52930400-52932200	Active TSS	H1 Cell Line	embryonic stem cell
48	chr3:52930400-52932200	Active TSS	Fetal Kidney	kidney
49	chr3:52930400-52932200	Active TSS	Pancreatic Islets	Pancreatic Islet
50	chr3:52930400-52932200	Active TSS	Ovary	ovary

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