Variant report

Variant	rs181269622
Chromosome Location	chr5:100168478-100168479
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021183	chr5:99625857-100221426	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1023765	chr5:99915011-100733755	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	esv1834675	chr5:100143084-100535029	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv980989	chr5:100167328-100171481	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:100147600-100218000	Weak transcription	Thymus	Thymus
2	chr5:100147800-100179000	Weak transcription	Fetal Thymus	thymus
3	chr5:100148600-100173200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr5:100159800-100170800	Strong transcription	Dnd41	blood
5	chr5:100164000-100173800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr5:100164200-100171800	Weak transcription	Fetal Stomach	stomach
7	chr5:100164200-100174800	Weak transcription	Placenta	Placenta
8	chr5:100164200-100176200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr5:100164400-100170200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr5:100164400-100173600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr5:100164400-100175000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr5:100164400-100175800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr5:100164600-100174800	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr5:100164600-100175000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr5:100164800-100169400	Weak transcription	Primary B cells from peripheral blood	blood
16	chr5:100164800-100170200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr5:100164800-100170400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr5:100165000-100168600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr5:100165000-100168600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:100165000-100173600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr5:100165000-100173600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr5:100165000-100174800	Weak transcription	Primary T cells from cord blood	blood
23	chr5:100165000-100175800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:100165000-100176200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr5:100165000-100176800	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr5:100165600-100174200	ZNF genes & repeats	GM12878-XiMat	blood
27	chr5:100166400-100170400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr5:100167200-100168600	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr5:100168200-100168800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr5:100168200-100169000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr5:100168200-100169600	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr5:100168200-100172400	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr5:100168400-100168800	Enhancers	Placenta Amnion	Placenta Amnion
34	chr5:100168400-100169000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr5:100168400-100169200	Enhancers	NHEK	skin
36	chr5:100168400-100170600	Strong transcription	Primary B cells from cord blood	blood

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