Variant report

Variant	rs181278359
Chromosome Location	chr3:143751810-143751811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143689173..143691180-chr3:143749985..143751944,2	K562	blood:
2	chr3:143749383..143753486-chr3:143754675..143758635,4	K562	blood:

Variant related genes	Relation type
ENSG00000181744	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877568	chr3:143621140-143992630	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3365190	chr3:143642195-143925886	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv591922	chr3:143645242-143825439	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1010117	chr3:143750590-144093775	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv536748	chr3:143750590-144093775	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143750000-143754200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr3:143750200-143753600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:143750400-143752600	Enhancers	Colon Smooth Muscle	Colon
4	chr3:143750400-143753200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr3:143750800-143752000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr3:143750800-143752600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:143750800-143752600	Flanking Active TSS	GM12878-XiMat	blood
8	chr3:143750800-143752800	Enhancers	Rectal Smooth Muscle	rectum
9	chr3:143750800-143753200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:143750800-143753200	Enhancers	Ovary	ovary
11	chr3:143750800-143755200	Enhancers	Brain Anterior Caudate	brain
12	chr3:143751000-143753600	Enhancers	Brain Hippocampus Middle	brain
13	chr3:143751000-143754600	Enhancers	Brain Cingulate Gyrus	brain
14	chr3:143751200-143754600	Enhancers	Brain Substantia Nigra	brain
15	chr3:143751600-143752200	Enhancers	Stomach Smooth Muscle	stomach
16	chr3:143751600-143752400	Enhancers	Primary B cells from peripheral blood	blood
17	chr3:143751600-143753000	Enhancers	Liver	Liver
18	chr3:143751800-143752000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:143751800-143753200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:143751800-143753600	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr3:143751800-143754200	Enhancers	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links