Variant report

Variant	rs181286039
Chromosome Location	chr11:17817455-17817456
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17809972..17812196-chr11:17815890..17818080,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KCNC1-2	chr11:17816331-17818197	NONHSAT018253

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832078	chr11:17780503-17953521	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1043973	chr11:17781560-17869896	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
4	nsv515890	chr11:17816412-17821182	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv526501	chr11:17816412-17824372	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17792000-17818400	Weak transcription	Right Atrium	heart
2	chr11:17796800-17828800	Weak transcription	Brain Germinal Matrix	brain
3	chr11:17798000-17819800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:17801600-17821800	Weak transcription	Spleen	Spleen
5	chr11:17802600-17819400	Weak transcription	Esophagus	oesophagus
6	chr11:17802800-17832400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:17803400-17819400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:17804000-17819400	Weak transcription	Liver	Liver
9	chr11:17805000-17819800	Weak transcription	Fetal Brain Male	brain
10	chr11:17805800-17829000	Weak transcription	Fetal Stomach	stomach
11	chr11:17806000-17837800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr11:17806600-17819400	Weak transcription	Right Ventricle	heart
13	chr11:17806800-17867400	Weak transcription	Primary B cells from cord blood	blood
14	chr11:17807200-17818600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr11:17808200-17861400	Weak transcription	Thymus	Thymus
16	chr11:17808800-17822200	Weak transcription	Adipose Nuclei	Adipose
17	chr11:17808800-17828600	Weak transcription	Fetal Brain Female	brain
18	chr11:17808800-17834600	Weak transcription	Aorta	Aorta
19	chr11:17809000-17833200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:17809200-17824800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr11:17809400-17819200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:17809600-17823600	Weak transcription	HSMMtube	muscle
23	chr11:17810400-17822200	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr11:17810400-17829400	Weak transcription	Fetal Intestine Small	intestine
25	chr11:17811000-17830800	Weak transcription	Primary T cells from cord blood	blood
26	chr11:17812600-17819200	Weak transcription	HMEC	breast
27	chr11:17812600-17819400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:17813000-17819400	Weak transcription	Left Ventricle	heart
29	chr11:17814200-17823200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr11:17815000-17819800	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr11:17815200-17819600	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr11:17815600-17841400	Weak transcription	HepG2	liver
33	chr11:17815800-17819400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr11:17816800-17818600	Enhancers	Psoas Muscle	Psoas

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