Variant report

Variant	rs181298988
Chromosome Location	chr5:42629188-42629189
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:75 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv1020464	chr5:42488628-42699394	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1018751	chr5:42491883-42697923	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1031160	chr5:42610090-42843255	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1019696	chr5:42610090-42844191	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1027023	chr5:42610250-42654999	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv597886	chr5:42610409-42854408	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1029933	chr5:42611976-42833385	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv537735	chr5:42611976-42833385	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv1019648	chr5:42616487-42696943	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv537736	chr5:42616487-42696943	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv1810677	chr5:42623245-42630968	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv1808812	chr5:42626206-42630968	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv511284	chr5:42626206-42631264	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3468440	chr5:42626695-42632993	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3487770	chr5:42627251-42631713	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3487771	chr5:42627345-42632193	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv597887	chr5:42627352-42630915	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv964767	chr5:42627512-42630712	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv2602099	chr5:42627607-42631528	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv3487769	chr5:42627695-42632143	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv3468439	chr5:42627720-42632068	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv3468438	chr5:42627840-42631506	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv3468442	chr5:42627840-42631506	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv513232	chr5:42628205-42631470	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
27	esv3487774	chr5:42628236-42631314	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
28	esv3487773	chr5:42628247-42631282	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
29	esv18870	chr5:42628248-42631270	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
30	esv3091	chr5:42628264-42631311	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
31	esv3487772	chr5:42628286-42631253	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
32	esv3487776	chr5:42628286-42631253	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
33	esv1007784	chr5:42628360-42631071	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
34	nsv597888	chr5:42628608-42630122	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
35	nsv597889	chr5:42628608-42630133	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
36	nsv597890	chr5:42628608-42630275	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
37	nsv597891	chr5:42628608-42630291	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
38	nsv597892	chr5:42628608-42630683	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
39	nsv597893	chr5:42628608-42630798	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
40	nsv597894	chr5:42628608-42630915	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
41	esv1799704	chr5:42628608-42630968	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
42	esv1799812	chr5:42628608-42630968	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
43	esv1805609	chr5:42628608-42630968	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
44	esv1806835	chr5:42628608-42630968	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
45	esv1810686	chr5:42628608-42630968	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
46	esv1811240	chr5:42628608-42630968	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
47	esv1811306	chr5:42628608-42630968	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
48	esv1811540	chr5:42628608-42630968	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
49	esv1811588	chr5:42628608-42630968	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
50	nsv597895	chr5:42628608-42630968	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42622800-42631200	Weak transcription	Adipose Nuclei	Adipose
2	chr5:42623000-42631400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr5:42623000-42644400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:42623200-42631400	Weak transcription	Right Atrium	heart
5	chr5:42623800-42632000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:42624400-42629400	Weak transcription	Primary B cells from peripheral blood	blood
7	chr5:42624600-42648000	Weak transcription	Fetal Lung	lung
8	chr5:42626600-42632600	Weak transcription	Aorta	Aorta
9	chr5:42626800-42631600	Weak transcription	Placenta	Placenta
10	chr5:42627200-42632200	Weak transcription	Ovary	ovary
11	chr5:42628200-42631400	Weak transcription	Left Ventricle	heart
12	chr5:42628400-42630400	Weak transcription	Fetal Heart	heart
13	chr5:42628400-42631400	Weak transcription	Liver	Liver
14	chr5:42628400-42631400	Weak transcription	Psoas Muscle	Psoas
15	chr5:42628400-42631400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr5:42628400-42632000	Weak transcription	Esophagus	oesophagus
17	chr5:42628800-42629200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr5:42629000-42629800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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