Variant report

Variant	rs1813105
Chromosome Location	chr6:54193168-54193169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1058768	0.87[ASN][1000 genomes]
rs1605676	0.92[ASN][1000 genomes]
rs1848439	0.92[ASN][1000 genomes]
rs1848440	0.95[ASN][1000 genomes]
rs1934791	0.92[ASN][1000 genomes]
rs7740970	0.92[ASN][1000 genomes]
rs9370290	0.95[ASN][1000 genomes]
rs9382323	0.95[ASN][1000 genomes]
rs9474801	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv885888	chr6:54132353-54266032	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1813105	TINAG	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54181000-54200400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:54191800-54193200	ZNF genes & repeats	Fetal Intestine Small	intestine
3	chr6:54191800-54193200	Strong transcription	Rectal Mucosa Donor 29	rectum
4	chr6:54192200-54193200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:54192200-54193400	ZNF genes & repeats	Fetal Intestine Large	intestine
6	chr6:54192600-54195200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:54192800-54200200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:54193000-54200200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links