Variant report

Variant	rs181316484
Chromosome Location	chr3:133465524-133465525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr3:133464740-133465562	HepG2	liver:	n/a	n/a
2	EP300	chr3:133464753-133465951	HepG2	liver:	n/a	chr3:133464957-133464973 chr3:133465936-133465949
3	SREBP1	chr3:133464736-133465929	HepG2	liver:	n/a	n/a
4	NFIC	chr3:133464671-133465951	HepG2	liver:	n/a	n/a
5	POLR2A	chr3:133464703-133467781	HepG2	liver:	n/a	n/a
6	POLR2A	chr3:133464533-133466088	HepG2	liver:	n/a	n/a
7	POLR2A	chr3:133464701-133466024	HepG2	liver:	n/a	n/a
8	POLR2A	chr3:133464731-133467233	HepG2	liver:	n/a	n/a
9	HEY1	chr3:133464668-133467472	HepG2	liver:	n/a	chr3:133465389-133465404
10	MYBL2	chr3:133464363-133465626	HepG2	liver:	n/a	n/a
11	MYBL2	chr3:133464479-133466127	HepG2	liver:	n/a	n/a
12	POLR2A	chr3:133464697-133466502	HepG2	liver:	n/a	n/a
13	POLR2A	chr3:133464423-133479250	HepG2	liver:	n/a	n/a
14	MXI1	chr3:133464497-133466063	HepG2	liver:	n/a	n/a
15	CEBPD	chr3:133464897-133465890	HepG2	liver:	n/a	n/a
16	HEY1	chr3:133464270-133467811	HepG2	liver:	n/a	chr3:133465389-133465404
17	POLR2A	chr3:133464411-133467827	HepG2	liver:	n/a	n/a
18	NR2F2	chr3:133464790-133465587	HepG2	liver:	n/a	n/a
19	RFX5	chr3:133464873-133465620	HepG2	liver:	n/a	n/a
20	MBD4	chr3:133464603-133466405	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
TF	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877506	chr3:133423473-133569777	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv877507	chr3:133465201-133473516	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133464400-133465800	Enhancers	Pancreas	Pancrea
2	chr3:133464400-133466400	Weak transcription	K562	blood
3	chr3:133464600-133465600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:133464600-133465600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
5	chr3:133464600-133465800	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:133464800-133465600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
7	chr3:133464800-133465600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
8	chr3:133464800-133465600	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:133464800-133465600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
10	chr3:133464800-133465600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:133464800-133465600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:133464800-133465600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr3:133464800-133465600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:133464800-133465600	Bivalent/Poised TSS	Psoas Muscle	Psoas
15	chr3:133464800-133465600	Flanking Bivalent TSS/Enh	Right Ventricle	heart
16	chr3:133464800-133465600	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
17	chr3:133464800-133466000	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
18	chr3:133464800-133467000	Active TSS	Brain Anterior Caudate	brain
19	chr3:133464800-133467000	Active TSS	Brain Substantia Nigra	brain
20	chr3:133464800-133467000	Bivalent/Poised TSS	HepG2	liver
21	chr3:133464800-133467200	Active TSS	Brain Hippocampus Middle	brain
22	chr3:133464800-133468200	Active TSS	Brain Cingulate Gyrus	brain
23	chr3:133464800-133468400	Active TSS	Brain Angular Gyrus	brain
24	chr3:133465000-133465600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
25	chr3:133465000-133465600	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr3:133465000-133465600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr3:133465000-133465600	Bivalent Enhancer	Placenta	Placenta
28	chr3:133465000-133465600	Enhancers	Gastric	stomach
29	chr3:133465000-133465600	Active TSS	Right Atrium	heart
30	chr3:133465000-133466000	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:133465000-133468200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr3:133465000-133468400	Active TSS	Brain Inferior Temporal Lobe	brain
33	chr3:133465200-133465600	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr3:133465200-133465600	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
35	chr3:133465200-133465600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr3:133465200-133465600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
37	chr3:133465200-133465600	Enhancers	Fetal Brain Male	brain
38	chr3:133465400-133465600	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr3:133465400-133465600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
40	chr3:133465400-133465600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr3:133465400-133465600	Flanking Active TSS	Liver	Liver
42	chr3:133465400-133465600	Active TSS	Brain Germinal Matrix	brain
43	chr3:133465400-133465600	Active TSS	Duodenum Smooth Muscle	Duodenum
44	chr3:133465400-133465600	Flanking Active TSS	Fetal Brain Female	brain
45	chr3:133465400-133465600	Bivalent Enhancer	Fetal Intestine Small	intestine
46	chr3:133465400-133465600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
47	chr3:133465400-133465600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
48	chr3:133465400-133465600	Bivalent Enhancer	HMEC	breast
49	chr3:133465400-133465800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
50	chr3:133465400-133465800	Bivalent Enhancer	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links