Variant report

Variant	rs1813201
Chromosome Location	chr3:59865385-59865386
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17254574	1.00[YRI][hapmap]
rs3772506	1.00[YRI][hapmap]
rs3772507	1.00[YRI][hapmap]
rs3821485	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv460564	chr3:59821071-59927727	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv590384	chr3:59821071-59927727	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv460565	chr3:59842644-59877988	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv470616	chr3:59842644-59877988	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv590385	chr3:59842644-59877988	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv590386	chr3:59846067-59912377	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1813201	CADPS	cis	cerebellum	SCAN
rs1813201	C3orf67	cis	parietal	SCAN
rs1813201	FHIT	cis	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59854800-59867000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr3:59854800-59870800	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr3:59858000-59865800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:59862600-59868800	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr3:59864000-59866200	Enhancers	Fetal Thymus	thymus
6	chr3:59864000-59867600	Enhancers	Dnd41	blood
7	chr3:59864000-59868600	Enhancers	Primary T cells from cord blood	blood
8	chr3:59864000-59871000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr3:59864200-59868600	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr3:59864400-59866600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr3:59864600-59867200	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr3:59864800-59869400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr3:59865000-59868400	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr3:59865200-59868600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr3:59865200-59869600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:59865200-59869800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:59865200-59871000	Weak transcription	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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