Variant report

Variant	rs181353198
Chromosome Location	chr8:102970153-102970154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102970055..102972345-chr8:102973060..102976868,3	MCF-7	breast:
2	chr8:102968711..102970531-chr8:102970861..102973050,2	MCF-7	breast:
3	chr8:102968258..102970175-chr8:102971587..102974473,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv831411	chr8:102937991-103108140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv972563	chr8:102970051-102975959	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2761453	chr8:102970136-102974682	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102957600-102970200	Weak transcription	Esophagus	oesophagus
2	chr8:102961000-102971200	Weak transcription	Aorta	Aorta
3	chr8:102963200-102973600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:102965200-102970800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr8:102965400-102971000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:102965400-102989800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr8:102966800-102971000	Weak transcription	Right Ventricle	heart
8	chr8:102967400-102972200	Weak transcription	GM12878-XiMat	blood
9	chr8:102968600-102970400	Enhancers	Fetal Brain Male	brain
10	chr8:102968800-102970800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:102968800-102972200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr8:102968800-102974200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr8:102969200-102979600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr8:102969600-102970200	Enhancers	Fetal Muscle Leg	muscle
15	chr8:102969600-102970200	Enhancers	Rectal Smooth Muscle	rectum
16	chr8:102969600-102970200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr8:102969600-102970400	Enhancers	Psoas Muscle	Psoas
18	chr8:102969600-102970800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr8:102969800-102970200	Enhancers	Brain Cingulate Gyrus	brain
20	chr8:102969800-102970200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr8:102969800-102970200	Enhancers	Ovary	ovary
22	chr8:102969800-102970200	Enhancers	Right Atrium	heart
23	chr8:102969800-102971600	Enhancers	NHDF-Ad	bronchial
24	chr8:102969800-102971800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr8:102970000-102970400	Enhancers	Left Ventricle	heart
26	chr8:102970000-102974400	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links