Variant report

Variant	rs1813656
Chromosome Location	chr1:86221995-86221996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10747324	0.82[AFR][1000 genomes]
rs10873718	0.82[AFR][1000 genomes]
rs10873719	0.82[AFR][1000 genomes]
rs1481200	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1764287	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1775985	0.84[AMR][1000 genomes]
rs1775986	0.84[AMR][1000 genomes]
rs1775987	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2014733	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2014750	0.82[AFR][1000 genomes]
rs2389973	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2389974	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2389975	0.82[AFR][1000 genomes]
rs313723	0.84[AMR][1000 genomes]
rs313724	0.84[AMR][1000 genomes]
rs369999	0.82[AFR][1000 genomes]
rs381453	0.82[AFR][1000 genomes]
rs383558	0.83[AFR][1000 genomes]
rs399547	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs401657	0.83[AFR][1000 genomes]
rs420515	0.82[AFR][1000 genomes]
rs425357	0.83[AFR][1000 genomes]
rs429040	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs430956	0.83[AFR][1000 genomes]
rs432254	0.81[AFR][1000 genomes]
rs4379699	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs444875	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs450953	0.82[AFR][1000 genomes]
rs6673975	0.82[AFR][1000 genomes]
rs6682235	0.82[AFR][1000 genomes]
rs6686719	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7521240	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7528385	0.82[AFR][1000 genomes]
rs7529942	0.82[AFR][1000 genomes]
rs7535884	0.81[AFR][1000 genomes]
rs7547023	0.82[AFR][1000 genomes]
rs7554621	0.82[AFR][1000 genomes]
rs9651138	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv3391173	chr1:86005637-86337469	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv817212	chr1:86127851-86658426	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86220200-86222600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:86220400-86222400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:86220800-86222400	Weak transcription	Fetal Lung	lung
4	chr1:86221800-86222400	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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