Variant report

Variant	rs181385286
Chromosome Location	chr11:63458496-63458497
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:63448565..63450815-chr11:63457627..63460001,3	MCF-7	breast:
2	chr11:63436300..63439514-chr11:63456446..63459653,3	K562	blood:
3	chr11:63450158..63452241-chr11:63456760..63459351,2	MCF-7	breast:
4	chr11:63455435..63460704-chr11:63461095..63464414,6	K562	blood:

Variant related genes	Relation type
ENSG00000133318	Chromatin interaction
ENSG00000184743	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv832183	chr11:63416678-63564565	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv897628	chr11:63456478-63508334	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv975850	chr11:63458107-63462594	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63450400-63466400	Weak transcription	Small Intestine	intestine
2	chr11:63450600-63469200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:63450800-63460400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:63450800-63465400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:63450800-63465800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:63450800-63517400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr11:63451000-63466800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:63451000-63466800	Weak transcription	Stomach Mucosa	stomach
9	chr11:63451000-63467000	Weak transcription	Thymus	Thymus
10	chr11:63451200-63466400	Weak transcription	Fetal Intestine Large	intestine
11	chr11:63451200-63466800	Weak transcription	Fetal Kidney	kidney
12	chr11:63451200-63475000	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr11:63451200-63478000	Weak transcription	HSMM	muscle
14	chr11:63451200-63486400	Weak transcription	Primary T cells from cord blood	blood
15	chr11:63451400-63466800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr11:63451400-63478000	Weak transcription	HSMMtube	muscle
17	chr11:63452000-63486400	Weak transcription	Fetal Thymus	thymus
18	chr11:63452600-63469000	Weak transcription	Left Ventricle	heart
19	chr11:63452800-63459400	Weak transcription	Fetal Stomach	stomach
20	chr11:63452800-63465400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:63452800-63466800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:63452800-63466800	Weak transcription	Lung	lung
23	chr11:63452800-63469000	Weak transcription	Fetal Intestine Small	intestine
24	chr11:63453000-63459200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr11:63453000-63472800	Weak transcription	Pancreas	Pancrea
26	chr11:63453200-63466800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr11:63453400-63467000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:63453400-63471800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr11:63453600-63467000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:63453600-63467200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr11:63454200-63459200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr11:63454400-63464000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:63454400-63465200	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr11:63454400-63466400	Weak transcription	Psoas Muscle	Psoas
35	chr11:63454400-63466400	Weak transcription	Right Atrium	heart
36	chr11:63454600-63466800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr11:63454800-63467000	Weak transcription	Liver	Liver
38	chr11:63454800-63476600	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr11:63455000-63466600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr11:63455000-63466600	Weak transcription	Fetal Muscle Trunk	muscle
41	chr11:63455200-63466800	Weak transcription	Stomach Smooth Muscle	stomach
42	chr11:63455400-63467200	Weak transcription	Brain Germinal Matrix	brain
43	chr11:63455600-63458800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:63455600-63459000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr11:63455600-63462600	Weak transcription	GM12878-XiMat	blood
46	chr11:63455600-63465800	Weak transcription	Colon Smooth Muscle	Colon
47	chr11:63455600-63466200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:63455600-63466800	Weak transcription	NHDF-Ad	bronchial
49	chr11:63455600-63467000	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr11:63455600-63468600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links