The 2.0 version of rSNPBase

Variant report

Variant rs181416983
Chromosome Location chr3:48774895-48774896
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:48771000-48776200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
2 chr3:48771200-48776000 Weak transcription HMEC breast
3 chr3:48772800-48777200 Enhancers Fetal Adrenal Gland Adrenal Gland
4 chr3:48772800-48780200 Enhancers Breast Myoepithelial Primary Cells Breast
5 chr3:48773000-48776400 Weak transcription NHEK skin
6 chr3:48773200-48775000 Weak transcription Fetal Lung lung
7 chr3:48773200-48775000 Weak transcription Left Ventricle heart
8 chr3:48773200-48775000 Weak transcription Stomach Mucosa stomach
9 chr3:48773200-48775000 Weak transcription Stomach Smooth Muscle stomach
10 chr3:48773200-48775600 Weak transcription Placenta Placenta
11 chr3:48773200-48776000 Weak transcription Rectal Smooth Muscle rectum
12 chr3:48773200-48776000 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr3:48773200-48777000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
14 chr3:48773200-48777000 Weak transcription HSMMtube muscle
15 chr3:48773200-48777200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
16 chr3:48773400-48775000 Weak transcription Brain Anterior Caudate brain
17 chr3:48773400-48775000 Weak transcription Duodenum Smooth Muscle Duodenum
18 chr3:48773400-48775000 Weak transcription Fetal Stomach stomach
19 chr3:48773400-48775200 Weak transcription Fetal Intestine Large intestine
20 chr3:48773400-48775800 Weak transcription Colon Smooth Muscle Colon
21 chr3:48773400-48776200 Weak transcription Colonic Mucosa Colon
22 chr3:48773400-48776200 Weak transcription Small Intestine intestine
23 chr3:48773400-48776400 Weak transcription Cortex derived primary cultured neurospheres brain
24 chr3:48773400-48776800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr3:48773400-48777000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
26 chr3:48773400-48777000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
27 chr3:48773400-48777000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
28 chr3:48773600-48775000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
29 chr3:48773600-48775000 Weak transcription Fetal Kidney kidney
30 chr3:48773600-48776000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
31 chr3:48773600-48777200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
32 chr3:48773600-48777200 Weak transcription NHDF-Ad bronchial
33 chr3:48773800-48777000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
34 chr3:48774000-48777000 Enhancers Duodenum Mucosa Duodenum
35 chr3:48774200-48775000 Weak transcription Fetal Intestine Small intestine
36 chr3:48774200-48776400 Enhancers Rectal Mucosa Donor 31 rectum
37 chr3:48774200-48777200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr3:48774400-48775000 Weak transcription HepG2 liver
39 chr3:48774600-48775400 Enhancers Primary monocytes fromperipheralblood blood
40 chr3:48774600-48776200 Enhancers Primary neutrophils fromperipheralblood blood
41 chr3:48774800-48775200 Weak transcription Skeletal Muscle Female skeletal muscle
42 chr3:48774800-48775400 Enhancers GM12878-XiMat blood
43 chr3:48774800-48775400 Enhancers Monocytes-CD14+_RO01746 blood
44 chr3:48774800-48775800 Enhancers Adipose Nuclei Adipose
45 chr3:48774800-48776000 Enhancers Right Atrium heart
46 chr3:48774800-48776800 Enhancers Rectal Mucosa Donor 29 rectum
47 chr3:48774800-48777200 Enhancers Liver Liver

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Last update: Aug 31, 2015