Variant report

Variant	rs181442080
Chromosome Location	chr5:152011378-152011379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023676	chr5:151979253-152925064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv537927	chr5:151979253-152925064	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv5074	chr5:152010691-152055779	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:152002600-152013600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:152002600-152014000	Weak transcription	Brain Substantia Nigra	brain
3	chr5:152004200-152014200	Weak transcription	Spleen	Spleen
4	chr5:152005600-152013800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:152005800-152012800	Weak transcription	Brain Germinal Matrix	brain
6	chr5:152006400-152014400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:152008400-152012200	Weak transcription	Right Atrium	heart
8	chr5:152008400-152013400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:152008400-152022800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:152009000-152016800	Enhancers	Fetal Brain Female	brain
11	chr5:152010400-152011800	Enhancers	Aorta	Aorta
12	chr5:152010400-152013600	Enhancers	Fetal Lung	lung
13	chr5:152010600-152011800	Enhancers	Fetal Brain Male	brain
14	chr5:152011000-152012400	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr5:152011200-152012800	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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