The 2.0 version of rSNPBase

Variant report

Variant rs181487003
Chromosome Location chr3:42953472-42953473
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:42948400-42954600 Weak transcription NH-A brain
2 chr3:42948600-42954200 Weak transcription Small Intestine intestine
3 chr3:42948600-42955200 Weak transcription Primary T helper naive cells fromperipheralblood blood
4 chr3:42948600-42955600 Weak transcription NHDF-Ad bronchial
5 chr3:42948800-42954600 Weak transcription Primary T helper naive cells from peripheral blood blood
6 chr3:42948800-42954600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
7 chr3:42949000-42954400 Weak transcription Stomach Mucosa stomach
8 chr3:42949000-42954600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
9 chr3:42949200-42955000 Weak transcription Brain Substantia Nigra brain
10 chr3:42949600-42953600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
11 chr3:42949600-42954000 Strong transcription Skeletal Muscle Male skeletal muscle
12 chr3:42949800-42953600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
13 chr3:42949800-42957000 ZNF genes & repeats Ovary ovary
14 chr3:42950000-42953600 ZNF genes & repeats Fetal Brain Female brain
15 chr3:42950000-42954000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr3:42950400-42954400 Weak transcription Thymus Thymus
17 chr3:42950800-42953600 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
18 chr3:42950800-42954400 Weak transcription Colonic Mucosa Colon
19 chr3:42951200-42954600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
20 chr3:42951400-42953600 ZNF genes & repeats Primary hematopoietic stem cells blood
21 chr3:42951400-42953600 Strong transcription Brain Inferior Temporal Lobe brain
22 chr3:42951600-42953600 Strong transcription Placenta Amnion Placenta Amnion
23 chr3:42951600-42954400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
24 chr3:42951800-42953600 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr3:42951800-42953600 ZNF genes & repeats Colon Smooth Muscle Colon
26 chr3:42951800-42953600 ZNF genes & repeats Duodenum Smooth Muscle Duodenum
27 chr3:42951800-42953800 ZNF genes & repeats Fetal Kidney kidney
28 chr3:42951800-42954200 Weak transcription Fetal Thymus thymus
29 chr3:42951800-42959000 ZNF genes & repeats Fetal Lung lung
30 chr3:42952000-42953600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
31 chr3:42952000-42953600 ZNF genes & repeats Adipose Nuclei Adipose
32 chr3:42952000-42953600 Strong transcription Brain Angular Gyrus brain
33 chr3:42952000-42953600 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
34 chr3:42952000-42953600 Strong transcription Fetal Heart heart
35 chr3:42952000-42953600 ZNF genes & repeats Pancreatic Islets Pancreatic Islet
36 chr3:42952000-42953600 Strong transcription Fetal Stomach stomach
37 chr3:42952000-42953600 Strong transcription Rectal Mucosa Donor 31 rectum
38 chr3:42952000-42953800 Strong transcription Fetal Intestine Large intestine
39 chr3:42952000-42954000 Strong transcription Fetal Adrenal Gland Adrenal Gland
40 chr3:42952000-42955400 Strong transcription Brain Cingulate Gyrus brain
41 chr3:42952000-42958800 ZNF genes & repeats Fetal Muscle Leg muscle
42 chr3:42952200-42953600 ZNF genes & repeats Liver Liver
43 chr3:42952400-42953600 ZNF genes & repeats Skeletal Muscle Female skeletal muscle
44 chr3:42952800-42953600 ZNF genes & repeats Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr3:42952800-42953600 ZNF genes & repeats Fetal Brain Male brain
46 chr3:42953000-42953600 Strong transcription Brain Germinal Matrix brain
47 chr3:42953000-42954200 Weak transcription Aorta Aorta
48 chr3:42953000-42954200 Weak transcription Esophagus oesophagus
49 chr3:42953000-42954200 Weak transcription Lung lung
50 chr3:42953000-42954200 Weak transcription Sigmoid Colon Sigmoid Colon

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Last update: Aug 31, 2015