Variant report

Variant	rs1815108
Chromosome Location	chr7:11914696-11914697
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10242909	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10256228	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10277646	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10499395	0.94[ASN][1000 genomes]
rs12111826	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12668522	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16877200	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16877205	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16877210	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17165246	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17165253	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17165261	0.82[EUR][1000 genomes]
rs17165329	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1815107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2908743	0.85[AMR][1000 genomes]
rs56931250	0.84[EUR][1000 genomes]
rs59090152	0.82[EUR][1000 genomes]
rs73676207	0.82[EUR][1000 genomes]
rs73676254	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73676255	0.81[ASN][1000 genomes]
rs73676258	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73676259	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73676260	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv830905	chr7:11793513-11941594	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv606203	chr7:11870711-11915630	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887615	chr7:11870711-11938060	Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv464368	chr7:11884682-11920546	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv606204	chr7:11884682-11920546	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv887616	chr7:11884682-11931567	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv887617	chr7:11884682-11938060	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv887618	chr7:11893588-11939433	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv887619	chr7:11893588-12043231	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1031064	chr7:11907570-11938607	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv887620	chr7:11908763-11993510	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv1021077	chr7:11914098-11960462	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11914400-11915800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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