Variant report

Variant	rs181516764
Chromosome Location	chr11:45952378-45952379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45952136..45954051-chr11:45957421..45959854,3	MCF-7	breast:
2	chr11:45949947..45952714-chr11:45954303..45955932,2	MCF-7	breast:
3	chr11:45952006..45954841-chr11:45955334..45958699,4	K562	blood:
4	chr11:45950793..45953982-chr11:45956779..45958840,3	MCF-7	breast:
5	chr11:45867884..45870625-chr11:45950267..45953158,3	MCF-7	breast:
6	chr11:45949887..45952560-chr11:46020571..46022730,2	K562	blood:

Variant related genes	Relation type
ENSG00000135365	Chromatin interaction
ENSG00000121671	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897314	chr11:45816020-45965129	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv1047462	chr11:45898630-45953696	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv516442	chr11:45899962-45983385	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	esv1794798	chr11:45903280-45953636	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	esv1805505	chr11:45912324-45956109	Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	esv3380342	chr11:45952168-45952713	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45941200-45953400	Weak transcription	Dnd41	blood
2	chr11:45944800-45955200	Weak transcription	Ovary	ovary
3	chr11:45945000-45953200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:45945200-45952600	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:45945200-45953000	Weak transcription	Brain Anterior Caudate	brain
6	chr11:45945200-45953200	Weak transcription	Liver	Liver
7	chr11:45945200-45954400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr11:45945200-45955000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:45945200-45955200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:45945200-45969400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr11:45946400-45953000	Weak transcription	Right Atrium	heart
12	chr11:45947400-45953600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:45947600-45953000	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:45947600-45953200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:45947800-45952600	Enhancers	Placenta	Placenta
16	chr11:45947800-45952800	Weak transcription	Colon Smooth Muscle	Colon
17	chr11:45948200-45954800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:45948600-45953000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:45948800-45957000	Weak transcription	NH-A	brain
20	chr11:45949000-45953800	Weak transcription	Osteobl	bone
21	chr11:45949200-45953400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr11:45949200-45954800	Strong transcription	Fetal Stomach	stomach
23	chr11:45949200-45956400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr11:45949400-45957000	Enhancers	HMEC	breast
25	chr11:45949600-45953400	Weak transcription	Adipose Nuclei	Adipose
26	chr11:45949600-45956600	Weak transcription	NHDF-Ad	bronchial
27	chr11:45949800-45956800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:45950000-45952400	Weak transcription	NHLF	lung
29	chr11:45950000-45954600	Weak transcription	Brain Substantia Nigra	brain
30	chr11:45950200-45953000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:45950200-45953200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr11:45950200-45953200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:45950200-45956200	Weak transcription	Fetal Lung	lung
34	chr11:45950200-45960000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr11:45950400-45952600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr11:45950400-45953600	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr11:45950400-45953600	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr11:45950600-45952600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr11:45950600-45953000	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr11:45950600-45953200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr11:45950600-45953400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr11:45950600-45955600	Flanking Active TSS	Primary B cells from cord blood	blood
43	chr11:45950600-45955600	Weak transcription	Brain Angular Gyrus	brain
44	chr11:45950800-45952400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr11:45950800-45952800	Flanking Active TSS	Primary B cells from peripheral blood	blood
46	chr11:45950800-45954000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr11:45950800-45954000	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr11:45950800-45955200	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr11:45951000-45952400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:45951000-45952600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links