Variant report

Variant	rs181523312
Chromosome Location	chr6:37673327-37673328
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37650720..37654671-chr6:37670149..37673658,3	MCF-7	breast:
2	chr6:37668297..37671248-chr6:37671352..37673734,2	K562	blood:
3	chr6:37669043..37673675-chr6:37673911..37678816,5	K562	blood:
4	chr6:37666178..37668975-chr6:37671383..37675389,6	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZFAND3-6	chr6:37672600-37674014	NONHSAT112283

Variant related genes	Relation type
ENSG00000112139	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv994460	chr6:37672682-37686270	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37671800-37674000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:37672600-37673400	Flanking Active TSS	NHLF	lung
3	chr6:37672600-37673800	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr6:37672600-37673800	Active TSS	H1 Cell Line	embryonic stem cell
5	chr6:37672600-37673800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:37672600-37673800	Active TSS	Brain Angular Gyrus	brain
7	chr6:37672600-37673800	Active TSS	Fetal Brain Female	brain
8	chr6:37672600-37674000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:37672600-37674000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:37672800-37673400	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr6:37672800-37673400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
12	chr6:37672800-37673400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
13	chr6:37672800-37673400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
14	chr6:37672800-37673400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr6:37672800-37673400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
16	chr6:37672800-37673400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:37672800-37673400	Flanking Active TSS	Fetal Intestine Small	intestine
18	chr6:37672800-37673400	Active TSS	Fetal Kidney	kidney
19	chr6:37672800-37673400	Enhancers	Lung	lung
20	chr6:37672800-37673400	Flanking Active TSS	Psoas Muscle	Psoas
21	chr6:37672800-37673600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:37672800-37673600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
23	chr6:37672800-37673600	Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr6:37672800-37673600	Flanking Active TSS	Placenta	Placenta
25	chr6:37672800-37673600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
26	chr6:37672800-37673800	Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr6:37672800-37673800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:37672800-37673800	Flanking Active TSS	Primary B cells from peripheral blood	blood
29	chr6:37672800-37673800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:37672800-37673800	Enhancers	Spleen	Spleen
31	chr6:37672800-37674000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr6:37672800-37674000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:37672800-37674000	Flanking Active TSS	Brain Germinal Matrix	brain
34	chr6:37672800-37674000	Enhancers	Fetal Brain Male	brain
35	chr6:37672800-37674000	Flanking Active TSS	Fetal Muscle Trunk	muscle
36	chr6:37672800-37674000	Flanking Active TSS	Fetal Muscle Leg	muscle
37	chr6:37673000-37673400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
38	chr6:37673000-37673400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr6:37673000-37673400	Active TSS	Primary T killer memory cells from peripheral blood	blood
40	chr6:37673000-37673400	Active TSS	Esophagus	oesophagus
41	chr6:37673000-37673400	Flanking Active TSS	Placenta Amnion	Placenta Amnion
42	chr6:37673000-37673400	Flanking Active TSS	Thymus	Thymus
43	chr6:37673000-37673400	Active TSS	HSMMtube	muscle
44	chr6:37673000-37673400	Active TSS	NHEK	skin
45	chr6:37673000-37673600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr6:37673000-37673600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:37673000-37673600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:37673000-37673600	Active TSS	Breast Myoepithelial Primary Cells	Breast
49	chr6:37673000-37673600	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
50	chr6:37673000-37673600	Active TSS	Primary T cells from cord blood	blood

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