Variant report

Variant	rs181527309
Chromosome Location	chr8:8961097-8961098
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:8956289..8958577-chr8:8959776..8961706,2	MCF-7	breast:
2	chr8:8930610..8933089-chr8:8960499..8962552,2	MCF-7	breast:
3	chr8:8958264..8961787-chr8:8977169..8981598,5	MCF-7	breast:
4	chr8:8932442..8934749-chr8:8960194..8961935,2	K562	blood:
5	chr8:8959541..8961848-chr8:8965504..8968046,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890331	chr8:8093240-8971100	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv1022468	chr8:8857853-9209167	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv539460	chr8:8857853-9209167	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv817373	chr8:8857854-9361049	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	nsv523098	chr8:8944307-8982396	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv526092	chr8:8944307-8982396	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1022328	chr8:8954003-9061281	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
9	esv2761405	chr8:8960271-8967105	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv610206	chr8:8961017-9162048	Genic enhancers Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8954600-8961800	Weak transcription	Lung	lung
2	chr8:8955200-8962000	Weak transcription	Gastric	stomach
3	chr8:8956800-8968000	Enhancers	Fetal Intestine Large	intestine
4	chr8:8957200-8963800	Enhancers	Fetal Intestine Small	intestine
5	chr8:8958200-8963800	Enhancers	Stomach Mucosa	stomach
6	chr8:8959000-8963400	Enhancers	Liver	Liver
7	chr8:8959200-8962600	Enhancers	Fetal Muscle Leg	muscle
8	chr8:8959400-8961200	Enhancers	K562	blood
9	chr8:8959400-8962200	Enhancers	Pancreas	Pancrea
10	chr8:8959600-8963400	Enhancers	Placenta Amnion	Placenta Amnion
11	chr8:8959800-8961400	Weak transcription	Small Intestine	intestine
12	chr8:8960200-8961400	Weak transcription	Psoas Muscle	Psoas
13	chr8:8960200-8962000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr8:8960400-8961600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:8960400-8961800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr8:8960400-8966600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr8:8960600-8961200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr8:8960600-8961400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr8:8960600-8961600	Weak transcription	Fetal Muscle Trunk	muscle
20	chr8:8960600-8966800	Weak transcription	Right Atrium	heart
21	chr8:8960800-8961400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr8:8960800-8961600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr8:8960800-8961600	Enhancers	A549	lung
24	chr8:8960800-8961800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr8:8960800-8961800	Weak transcription	Fetal Lung	lung
26	chr8:8960800-8961800	Bivalent Enhancer	HepG2	liver
27	chr8:8960800-8962000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr8:8960800-8962200	Weak transcription	Colonic Mucosa	Colon
29	chr8:8960800-8962800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr8:8960800-8963200	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr8:8960800-8967800	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr8:8961000-8961200	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr8:8961000-8961400	Enhancers	Fetal Heart	heart
34	chr8:8961000-8961400	Weak transcription	Left Ventricle	heart
35	chr8:8961000-8961800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr8:8961000-8961800	Weak transcription	Right Ventricle	heart
37	chr8:8961000-8962000	Enhancers	Rectal Mucosa Donor 29	rectum
38	chr8:8961000-8963600	Enhancers	Duodenum Mucosa	Duodenum
39	chr8:8961000-8966400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links