Variant report

Variant	rs181540918
Chromosome Location	chr1:173975423-173975424
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:173975275..173977152-chr1:173983041..173985333,2	K562	blood:
2	chr1:173791497..173794247-chr1:173975403..173977054,2	K562	blood:
3	chr1:173974909..173980524-chr1:173986982..173992490,9	MCF-7	breast:
4	chr1:173970352..173972898-chr1:173974033..173976083,2	MCF-7	breast:
5	chr1:173974072..173982740-chr1:173986260..173992598,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224977	Chromatin interaction
ENSG00000135870	Chromatin interaction
ENSG00000120334	Chromatin interaction
ENSG00000117593	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916960	chr1:173907804-174080248	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv872551	chr1:173913804-174025660	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv831937	chr1:173949373-174131463	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
4	nsv825431	chr1:173974359-173976154	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173915600-173977800	Weak transcription	Stomach Mucosa	stomach
2	chr1:173942200-173986200	Weak transcription	Fetal Brain Male	brain
3	chr1:173958600-173987200	Weak transcription	Gastric	stomach
4	chr1:173962000-173988400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:173962200-173976600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:173962200-173976800	Weak transcription	NH-A	brain
7	chr1:173962200-173977200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr1:173962200-173978400	Weak transcription	Colonic Mucosa	Colon
9	chr1:173962200-173978600	Weak transcription	Lung	lung
10	chr1:173962200-173983200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr1:173962200-173984200	Weak transcription	Primary T cells from cord blood	blood
12	chr1:173962200-173989000	Weak transcription	Fetal Kidney	kidney
13	chr1:173962200-173989600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr1:173962200-173989600	Weak transcription	Aorta	Aorta
15	chr1:173962200-173989800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:173962200-173990400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:173962400-173977400	Weak transcription	Hela-S3	cervix
18	chr1:173962400-173987800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr1:173962600-173986000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr1:173962600-173988400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr1:173962600-173988600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr1:173962600-173989400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr1:173962800-173989800	Weak transcription	Placenta	Placenta
24	chr1:173965000-173989600	Weak transcription	Fetal Thymus	thymus
25	chr1:173965200-173986600	Weak transcription	HUVEC	blood vessel
26	chr1:173966200-173977600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr1:173966200-173981000	Weak transcription	Pancreas	Pancrea
28	chr1:173966200-173986200	Weak transcription	Fetal Brain Female	brain
29	chr1:173966200-173989800	Weak transcription	Fetal Muscle Leg	muscle
30	chr1:173966400-173976600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr1:173966400-173976600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr1:173966400-173976600	Weak transcription	K562	blood
33	chr1:173966400-173976800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr1:173966400-173978400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr1:173966400-173978400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr1:173966400-173986600	Weak transcription	Thymus	Thymus
37	chr1:173966400-173987800	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr1:173966400-173989600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr1:173966400-173989800	Weak transcription	Esophagus	oesophagus
40	chr1:173967800-173987600	Weak transcription	Brain Germinal Matrix	brain
41	chr1:173968200-173978400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr1:173968400-173976600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr1:173968400-173983200	Weak transcription	Fetal Intestine Small	intestine
44	chr1:173968400-173987200	Weak transcription	Fetal Intestine Large	intestine
45	chr1:173969000-173983000	Weak transcription	HepG2	liver
46	chr1:173969200-173976600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr1:173969200-173978400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr1:173969800-173981000	Weak transcription	Small Intestine	intestine
49	chr1:173970600-173976600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr1:173970800-173977000	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links