Variant report

Variant	rs181553969
Chromosome Location	chr5:60577310-60577311
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:60568345..60570305-chr5:60576207..60578303,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034038	chr5:60375328-60607654	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv1028884	chr5:60414723-60732779	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv823088	chr5:60572580-60577406	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3387374	chr5:60577245-60579868	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60571800-60583800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:60572000-60582400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:60573400-60586600	Weak transcription	Esophagus	oesophagus
4	chr5:60573400-60594800	Weak transcription	Right Atrium	heart
5	chr5:60574000-60585400	Weak transcription	Spleen	Spleen
6	chr5:60574600-60577600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr5:60575200-60577400	Enhancers	Fetal Heart	heart
8	chr5:60575400-60577400	Enhancers	Fetal Intestine Small	intestine
9	chr5:60575400-60577400	Enhancers	HMEC	breast
10	chr5:60575400-60577800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:60575400-60577800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr5:60575400-60577800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:60575600-60577400	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr5:60575600-60577400	Enhancers	Brain Germinal Matrix	brain
15	chr5:60575600-60577400	Enhancers	Fetal Intestine Large	intestine
16	chr5:60575600-60577800	Enhancers	HUVEC	blood vessel
17	chr5:60575800-60577400	Enhancers	Primary B cells from cord blood	blood
18	chr5:60575800-60577400	Enhancers	A549	lung
19	chr5:60575800-60577400	Enhancers	NHDF-Ad	bronchial
20	chr5:60575800-60577600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr5:60575800-60577800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr5:60576000-60577400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr5:60576000-60577400	Enhancers	Fetal Kidney	kidney
24	chr5:60576000-60577600	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr5:60576200-60577800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:60576600-60577400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr5:60576600-60581200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr5:60576600-60588800	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr5:60577000-60578200	Weak transcription	Stomach Mucosa	stomach
30	chr5:60577000-60582400	Weak transcription	NHLF	lung
31	chr5:60577200-60577600	Enhancers	NHEK	skin
32	chr5:60577200-60579400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr5:60577200-60581800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr5:60577200-60582000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr5:60577200-60582400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr5:60577200-60582400	Weak transcription	Pancreas	Pancrea
37	chr5:60577200-60582400	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr5:60577200-60582400	Weak transcription	HSMM	muscle
39	chr5:60577200-60582600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr5:60577200-60585400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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