Variant report

Variant	rs181559540
Chromosome Location	chr1:150279272-150279273
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:150274327..150277106-chr1:150277953..150280795,3	MCF-7	breast:
2	chr1:150253722..150255398-chr1:150277139..150279964,2	MCF-7	breast:
3	chr1:150207006..150210837-chr1:150278818..150282329,4	K562	blood:
4	chr1:150278389..150282847-chr1:150283381..150286594,4	K562	blood:
5	chr1:150277809..150280750-chr1:150280887..150284512,5	MCF-7	breast:
6	chr1:150277059..150279292-chr1:150282914..150285581,2	MCF-7	breast:
7	chr1:150265474..150267107-chr1:150276871..150279433,3	K562	blood:
8	chr1:150270358..150272850-chr1:150276338..150279284,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000187145	Chromatin interaction
ENSG00000143401	Chromatin interaction
ENSG00000159208	Chromatin interaction
ENSG00000222222	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv916014	chr1:150187139-150537483	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
3	nsv1011223	chr1:150229205-150279380	Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	esv3330234	chr1:150278729-150279516	Strong transcription Weak transcription Enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150267000-150280000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr1:150267000-150280000	Weak transcription	Small Intestine	intestine
3	chr1:150267000-150284000	Weak transcription	Brain Substantia Nigra	brain
4	chr1:150267000-150293200	Weak transcription	Stomach Mucosa	stomach
5	chr1:150267200-150280000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:150267200-150280000	Weak transcription	Esophagus	oesophagus
7	chr1:150267200-150286400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr1:150267800-150280800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr1:150267800-150281400	Strong transcription	Liver	Liver
10	chr1:150267800-150282000	Strong transcription	Fetal Muscle Trunk	muscle
11	chr1:150268000-150281000	Strong transcription	Fetal Muscle Leg	muscle
12	chr1:150268000-150281400	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr1:150268000-150282600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr1:150268000-150293200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr1:150268200-150279800	Weak transcription	Pancreas	Pancrea
16	chr1:150268200-150282600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:150268200-150282600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr1:150268200-150282800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:150268200-150282800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr1:150268200-150282800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:150268600-150281000	Weak transcription	Fetal Brain Male	brain
22	chr1:150269000-150281400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr1:150269000-150282800	Strong transcription	Fetal Thymus	thymus
24	chr1:150269400-150282800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr1:150271600-150284000	Weak transcription	Colonic Mucosa	Colon
26	chr1:150272600-150282800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr1:150273600-150280800	Strong transcription	Thymus	Thymus
28	chr1:150274000-150282800	Strong transcription	Fetal Brain Female	brain
29	chr1:150274400-150281000	Strong transcription	Primary T cells from cord blood	blood
30	chr1:150274800-150279800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr1:150274800-150282800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr1:150274800-150284600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr1:150275000-150280000	Weak transcription	Ovary	ovary
34	chr1:150275000-150280000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr1:150275000-150280200	Weak transcription	Brain Hippocampus Middle	brain
36	chr1:150275000-150286400	Weak transcription	HepG2	liver
37	chr1:150275200-150279600	Weak transcription	Lung	lung
38	chr1:150275200-150279800	Weak transcription	Left Ventricle	heart
39	chr1:150275200-150280000	Weak transcription	Gastric	stomach
40	chr1:150275200-150280000	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr1:150275200-150280400	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr1:150275200-150281600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr1:150275200-150282800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr1:150275400-150279800	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr1:150275400-150280000	Weak transcription	HSMMtube	muscle
46	chr1:150275400-150280200	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr1:150275400-150280400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr1:150275400-150280600	Weak transcription	Brain Angular Gyrus	brain
49	chr1:150275400-150282600	Weak transcription	Right Ventricle	heart
50	chr1:150275400-150283400	Weak transcription	Aorta	Aorta

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