Variant report

Variant	rs181575629
Chromosome Location	chr21:15588805-15588806
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058202	chr21:14706767-15628668	Weak transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	nsv869466	chr21:15482572-15683385	Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv913402	chr21:15545350-15606128	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1056588	chr21:15583231-15615520	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1066738	chr21:15587815-15642948	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15587800-15589600	Active TSS	Duodenum Smooth Muscle	Duodenum
2	chr21:15588000-15589000	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr21:15588000-15589000	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr21:15588000-15589000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr21:15588000-15589000	Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr21:15588000-15589000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr21:15588000-15589000	Active TSS	Ovary	ovary
8	chr21:15588000-15589200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr21:15588000-15589200	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr21:15588000-15589200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr21:15588000-15589200	Bivalent/Poised TSS	A549	lung
12	chr21:15588000-15589400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr21:15588000-15589400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr21:15588000-15589400	Active TSS	Brain Angular Gyrus	brain
15	chr21:15588000-15589400	Active TSS	Brain Anterior Caudate	brain
16	chr21:15588000-15589600	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr21:15588000-15589600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
18	chr21:15588000-15589600	Active TSS	Brain Cingulate Gyrus	brain
19	chr21:15588000-15589600	Active TSS	Brain Hippocampus Middle	brain
20	chr21:15588000-15589600	Active TSS	Brain Inferior Temporal Lobe	brain
21	chr21:15588000-15589600	Active TSS	Brain Substantia Nigra	brain
22	chr21:15588000-15589600	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr21:15588000-15589800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr21:15588200-15589000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr21:15588200-15589000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr21:15588200-15589000	Active TSS	iPS-18 Cell Line	embryonic stem cell
27	chr21:15588200-15589000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr21:15588200-15589000	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
29	chr21:15588200-15589000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
30	chr21:15588200-15589000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr21:15588200-15589000	Active TSS	Colonic Mucosa	Colon
32	chr21:15588200-15589000	Bivalent/Poised TSS	Esophagus	oesophagus
33	chr21:15588200-15589000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
34	chr21:15588200-15589000	Active TSS	Fetal Intestine Large	intestine
35	chr21:15588200-15589000	Active TSS	Gastric	stomach
36	chr21:15588200-15589000	Flanking Bivalent TSS/Enh	Psoas Muscle	Psoas
37	chr21:15588200-15589000	Active TSS	Rectal Mucosa Donor 29	rectum
38	chr21:15588200-15589000	Active TSS	HSMM	muscle
39	chr21:15588200-15589000	Bivalent/Poised TSS	HSMMtube	muscle
40	chr21:15588200-15589000	Active TSS	K562	blood
41	chr21:15588200-15589000	Active TSS	Osteobl	bone
42	chr21:15588200-15589200	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr21:15588200-15589200	Active TSS	iPS-15b Cell Line	embryonic stem cell
44	chr21:15588200-15589200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
45	chr21:15588200-15589200	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
46	chr21:15588200-15589200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr21:15588200-15589200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr21:15588200-15589200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr21:15588200-15589200	Flanking Active TSS	Adipose Nuclei	Adipose
50	chr21:15588200-15589200	Active TSS	Duodenum Mucosa	Duodenum

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