Variant report

Variant	rs181588
Chromosome Location	chr3:155434506-155434507
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10936015	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11923772	0.80[EUR][1000 genomes]
rs173370	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs184836	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2320190	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs358720	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs358722	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs358723	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs358744	0.80[EUR][1000 genomes]
rs358745	0.80[EUR][1000 genomes]
rs358746	0.80[EUR][1000 genomes]
rs358748	0.80[EUR][1000 genomes]
rs55989602	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7619505	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv829763	chr3:155417552-155470079	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155412600-155437400	Weak transcription	Pancreas	Pancrea
2	chr3:155432400-155434800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:155432400-155461600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:155432600-155434800	Enhancers	HepG2	liver
5	chr3:155432600-155435000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:155433200-155434800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:155433200-155435000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:155433400-155435200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:155433400-155435200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:155434200-155436400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:155434200-155436600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:155434400-155434800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr3:155434400-155435400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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