Variant report

Variant	rs181650953
Chromosome Location	chr3:111794798-111794799
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111792824..111796051-chr3:111796443..111799498,4	MCF-7	breast:
2	chr3:111792401..111798775-chr3:111803596..111811380,13	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114529	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755927	chr3:111794310-111834310	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111791600-111796600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr3:111792400-111794800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr3:111792600-111795200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:111792800-111794800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr3:111792800-111794800	Enhancers	HUVEC	blood vessel
6	chr3:111793200-111795000	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr3:111793200-111795400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:111793600-111796000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:111793800-111794800	Enhancers	Primary T cells fromperipheralblood	blood
10	chr3:111793800-111794800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr3:111794000-111795200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:111794200-111794800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr3:111794200-111794800	Enhancers	Placenta	Placenta
14	chr3:111794400-111794800	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr3:111794400-111795200	Enhancers	Primary T cells from cord blood	blood
16	chr3:111794600-111794800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:111794600-111794800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:111794600-111794800	Enhancers	Placenta Amnion	Placenta Amnion
19	chr3:111794600-111794800	Enhancers	Stomach Mucosa	stomach
20	chr3:111794600-111794800	Enhancers	Hela-S3	cervix
21	chr3:111794600-111794800	Enhancers	NH-A	brain
22	chr3:111794600-111794800	Enhancers	NHEK	skin
23	chr3:111794600-111795000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:111794600-111795000	Enhancers	Muscle Satellite Cultured Cells	--
25	chr3:111794600-111795000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:111794600-111795200	Enhancers	A549	lung
27	chr3:111794600-111795200	Enhancers	HMEC	breast
28	chr3:111794600-111795400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr3:111794600-111795800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr3:111794600-111796000	Enhancers	Fetal Intestine Small	intestine
31	chr3:111794600-111797600	Enhancers	Fetal Thymus	thymus
32	chr3:111794600-111797800	Enhancers	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links