Variant report

Variant	rs1816923
Chromosome Location	chr11:36393584-36393585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36393103..36395662-chr11:36402907..36405828,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11033575	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11033576	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2554012	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4756307	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs525634	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7115677	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36378200-36393800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:36382800-36393800	Weak transcription	Brain Angular Gyrus	brain
3	chr11:36384800-36394000	Weak transcription	Gastric	stomach
4	chr11:36385200-36393800	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:36385400-36394000	Weak transcription	Pancreas	Pancrea
6	chr11:36386400-36393800	Weak transcription	HSMMtube	muscle
7	chr11:36386400-36394200	Weak transcription	Small Intestine	intestine
8	chr11:36386600-36393600	Weak transcription	Hela-S3	cervix
9	chr11:36386600-36394800	Weak transcription	Fetal Kidney	kidney
10	chr11:36387600-36393800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:36388000-36393800	Weak transcription	Brain Substantia Nigra	brain
12	chr11:36388000-36397200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:36388400-36393800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr11:36388600-36397000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:36389000-36393800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr11:36389600-36397600	Weak transcription	Spleen	Spleen
17	chr11:36390000-36393600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:36390200-36393800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:36391000-36393800	Weak transcription	Ovary	ovary
20	chr11:36391600-36394000	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr11:36391600-36397400	Enhancers	Fetal Intestine Large	intestine
22	chr11:36392200-36397400	Enhancers	Fetal Intestine Small	intestine
23	chr11:36392600-36393600	Weak transcription	HSMM	muscle
24	chr11:36392800-36395600	Enhancers	Duodenum Mucosa	Duodenum
25	chr11:36393000-36393800	Weak transcription	A549	lung
26	chr11:36393200-36394200	Enhancers	Colonic Mucosa	Colon
27	chr11:36393200-36394800	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr11:36393400-36393600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum

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