Variant report

Variant	rs181695642
Chromosome Location	chr7:106685907-106685908
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:106682031..106689663-chr7:106807150..106811711,11	K562	blood:
2	chr7:106685168..106686791-chr7:107384430..107386417,2	K562	blood:
3	chr7:106682746..106686911-chr7:106807556..106811745,9	K562	blood:
4	chr7:106685778..106688042-chr7:106804016..106805559,2	MCF-7	breast:
5	chr7:106415431..106417500-chr7:106684365..106686505,2	K562	blood:
6	chr7:106685233..106687642-chr7:106786297..106788782,2	K562	blood:
7	chr7:106685221..106688860-chr7:106786297..106789878,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000105856	Chromatin interaction
ENSG00000105879	Chromatin interaction
ENSG00000241764	Chromatin interaction
ENSG00000228742	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3440198	chr7:106684366-106686514	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106684200-106686400	Active TSS	Stomach Smooth Muscle	stomach
2	chr7:106684400-106686000	Active TSS	Brain Hippocampus Middle	brain
3	chr7:106684400-106686000	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr7:106684400-106686000	Active TSS	Fetal Lung	lung
5	chr7:106684400-106686200	Active TSS	NHDF-Ad	bronchial
6	chr7:106684400-106686400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:106684400-106686400	Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr7:106684400-106686400	Active TSS	Brain Inferior Temporal Lobe	brain
9	chr7:106684400-106686400	Active TSS	NHLF	lung
10	chr7:106684400-106686600	Active TSS	Brain Substantia Nigra	brain
11	chr7:106684400-106686800	Active TSS	Rectal Smooth Muscle	rectum
12	chr7:106684400-106687000	Active TSS	Brain Anterior Caudate	brain
13	chr7:106684400-106687000	Active TSS	Fetal Stomach	stomach
14	chr7:106684400-106687200	Active TSS	Ovary	ovary
15	chr7:106684400-106688400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr7:106684600-106686000	Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr7:106684600-106686200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:106684600-106686200	Active TSS	Aorta	Aorta
19	chr7:106684600-106686200	Active TSS	Left Ventricle	heart
20	chr7:106684600-106686400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr7:106684600-106686600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr7:106684600-106686600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr7:106684600-106686600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr7:106684600-106686600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr7:106684600-106686600	Active TSS	Fetal Kidney	kidney
26	chr7:106684600-106686600	Active TSS	Right Ventricle	heart
27	chr7:106684600-106686800	Active TSS	H9 Cell Line	embryonic stem cell
28	chr7:106684600-106686800	Active TSS	Pancreas	Pancrea
29	chr7:106684600-106687000	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr7:106684600-106687400	Active TSS	Brain Angular Gyrus	brain
31	chr7:106684800-106686000	Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr7:106684800-106686000	Active TSS	iPS-20b Cell Line	embryonic stem cell
33	chr7:106684800-106686000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr7:106684800-106686200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr7:106684800-106686200	Active TSS	iPS-15b Cell Line	embryonic stem cell
36	chr7:106684800-106686200	Active TSS	Brain Cingulate Gyrus	brain
37	chr7:106684800-106686200	Bivalent/Poised TSS	NHEK	skin
38	chr7:106684800-106686400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr7:106684800-106686400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr7:106684800-106687800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr7:106685000-106686400	Active TSS	H1 Cell Line	embryonic stem cell
42	chr7:106685000-106686400	Active TSS	HUVEC	blood vessel
43	chr7:106685000-106687200	Active TSS	Fetal Brain Female	brain
44	chr7:106685000-106687600	Active TSS	Fetal Brain Male	brain
45	chr7:106685400-106686000	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
46	chr7:106685400-106686000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
47	chr7:106685400-106686000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
48	chr7:106685400-106686000	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
49	chr7:106685400-106686000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr7:106685400-106686000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links