Variant report

Variant	rs181708170
Chromosome Location	chr10:38727517-38727518
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427860	chr10:38588021-38818835	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv895034	chr10:38632352-38743545	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2764202	chr10:38641508-39076221	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1048953	chr10:38645824-39074038	Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv428230	chr10:38652001-38818835	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2757379	chr10:38677023-38978680	Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	esv2759744	chr10:38677023-39154935	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv947860	chr10:38678275-38747483	Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv895035	chr10:38678941-38739427	Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv895036	chr10:38678941-38741100	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv895037	chr10:38678941-38741777	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv895038	chr10:38678941-38890240	ZNF genes & repeats Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv1036840	chr10:38682579-39074038	ZNF genes & repeats Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
14	nsv540569	chr10:38689167-38769822	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
15	esv16395	chr10:38693709-38772324	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv821215	chr10:38693709-38772324	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	nsv540570	chr10:38696654-38728292	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv540571	chr10:38696654-38743406	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
19	nsv540572	chr10:38696654-38769822	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
20	nsv1052697	chr10:38696664-39030136	Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
21	nsv1043781	chr10:38696664-39074038	ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
22	nsv895039	chr10:38700234-38739557	Strong transcription Weak transcription ZNF genes & repeats	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
23	nsv895040	chr10:38700234-38741100	ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
24	nsv895041	chr10:38700234-38741777	Strong transcription Weak transcription ZNF genes & repeats	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
25	nsv550420	chr10:38700234-38768341	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
26	nsv895042	chr10:38700234-38775205	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
27	nsv895043	chr10:38700234-38790428	Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
28	nsv948261	chr10:38720728-38744526	Strong transcription Weak transcription ZNF genes & repeats	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
29	nsv895044	chr10:38725007-38741100	Strong transcription Weak transcription ZNF genes & repeats	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
30	nsv895045	chr10:38725007-38741777	Strong transcription Weak transcription ZNF genes & repeats	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
31	esv3419937	chr10:38726371-38728919	Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38692200-38741000	Weak transcription	Aorta	Aorta
2	chr10:38692400-38739600	Weak transcription	Gastric	stomach
3	chr10:38692600-38736800	Weak transcription	Pancreas	Pancrea
4	chr10:38692600-38737200	Weak transcription	Esophagus	oesophagus
5	chr10:38692800-38728800	Weak transcription	Brain Substantia Nigra	brain
6	chr10:38692800-38736800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr10:38692800-38736800	Weak transcription	Brain Anterior Caudate	brain
8	chr10:38692800-38736800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr10:38692800-38737200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:38692800-38737200	Weak transcription	Brain Hippocampus Middle	brain
11	chr10:38692800-38737400	Weak transcription	Fetal Intestine Large	intestine
12	chr10:38692800-38737600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:38692800-38741200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr10:38693000-38736800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr10:38693000-38737200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:38693000-38737200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr10:38693000-38737200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr10:38693000-38737200	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:38693000-38737400	Weak transcription	Placenta	Placenta
20	chr10:38693000-38739200	Weak transcription	Primary B cells from peripheral blood	blood
21	chr10:38698600-38738800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:38698800-38729600	Weak transcription	Left Ventricle	heart
23	chr10:38698800-38736800	Weak transcription	Fetal Muscle Trunk	muscle
24	chr10:38698800-38736800	Weak transcription	Lung	lung
25	chr10:38700200-38739600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr10:38700600-38736800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr10:38700600-38736800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:38700800-38737200	Weak transcription	Fetal Stomach	stomach
29	chr10:38703000-38736800	Weak transcription	Fetal Intestine Small	intestine
30	chr10:38704800-38736800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr10:38706400-38736800	Weak transcription	Ovary	ovary
32	chr10:38707600-38738800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr10:38710400-38737400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr10:38711200-38739600	Weak transcription	Adipose Nuclei	Adipose
35	chr10:38715800-38737400	Weak transcription	Fetal Brain Female	brain
36	chr10:38716400-38736800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:38722600-38736600	Weak transcription	Liver	Liver
38	chr10:38723400-38739400	Weak transcription	Brain Angular Gyrus	brain
39	chr10:38724600-38737400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr10:38724800-38735600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr10:38724800-38739600	Weak transcription	Fetal Lung	lung
42	chr10:38725000-38739000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr10:38725400-38739000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr10:38726400-38736000	Weak transcription	Colon Smooth Muscle	Colon
45	chr10:38726400-38739400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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