Variant report

Variant	rs1817487
Chromosome Location	chr5:113095090-113095091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10075511	0.84[AMR][1000 genomes]
rs10463648	0.83[AMR][1000 genomes]
rs11241236	0.83[AMR][1000 genomes]
rs11738652	0.83[AMR][1000 genomes]
rs11747079	0.84[AMR][1000 genomes]
rs12054785	0.81[AMR][1000 genomes]
rs12189192	0.83[AMR][1000 genomes]
rs12514754	0.85[ASN][1000 genomes]
rs12658572	0.83[AMR][1000 genomes]
rs12719167	0.84[AMR][1000 genomes]
rs1384273	0.83[AMR][1000 genomes]
rs1384286	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1482360	0.81[AMR][1000 genomes]
rs1482361	0.83[AMR][1000 genomes]
rs1482362	0.83[AMR][1000 genomes]
rs1482370	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1871916	0.82[AMR][1000 genomes]
rs1905135	0.85[ASN][1000 genomes]
rs1905136	0.83[AMR][1000 genomes]
rs2128314	0.84[AMR][1000 genomes]
rs28814282	0.83[AMR][1000 genomes]
rs2900079	0.82[AMR][1000 genomes]
rs34358509	0.83[ASN][1000 genomes]
rs34956734	0.85[ASN][1000 genomes]
rs4705585	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6871044	0.84[AMR][1000 genomes]
rs6871344	0.83[AMR][1000 genomes]
rs7710947	0.85[ASN][1000 genomes]
rs7731619	0.83[AMR][1000 genomes]
rs7734857	0.85[ASN][1000 genomes]
rs7737167	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462390	chr5:113076095-113181289	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv471041	chr5:113076095-113181289	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv599408	chr5:113076095-113181289	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv432799	chr5:113077017-113150101	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv599409	chr5:113079354-113184211	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1018938	chr5:113080567-113185361	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1027940	chr5:113091513-113185361	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113094800-113096000	Enhancers	GM12878-XiMat	blood

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