Variant report

Variant	rs181777405
Chromosome Location	chr15:52028819-52028820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:52028180..52031136-chr15:52040562..52045385,6	MCF-7	breast:
2	chr15:51914058..51915723-chr15:52028393..52030272,2	MCF-7	breast:
3	chr15:52027363..52032665-chr15:52041435..52046045,23	MCF-7	breast:
4	chr15:52026672..52029372-chr15:52056834..52058990,2	MCF-7	breast:
5	chr15:51762002..51764362-chr15:52028309..52030001,2	MCF-7	breast:
6	chr15:52026416..52029376-chr15:52033345..52036135,2	K562	blood:
7	chr15:51911576..51916583-chr15:52027382..52031699,5	MCF-7	breast:
8	chr15:52028355..52032748-chr15:52040539..52046492,10	K562	blood:

No data

Variant related genes	Relation type
ENSG00000104093	Chromatin interaction
ENSG00000128872	Chromatin interaction
ENSG00000259377	Chromatin interaction
ENSG00000140280	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830011	chr15:52027777-52048710	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	n/a
2	esv3322785	chr15:52028185-52031033	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	n/a
3	esv3433188	chr15:52028510-52031058	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52020200-52029000	Weak transcription	NH-A	brain
2	chr15:52024600-52029000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:52025400-52029000	Weak transcription	Esophagus	oesophagus
4	chr15:52026400-52029400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr15:52026800-52029000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
6	chr15:52027000-52030400	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr15:52027200-52029200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:52027200-52029400	Flanking Active TSS	Dnd41	blood
9	chr15:52027400-52029200	Flanking Active TSS	Primary T cells from cord blood	blood
10	chr15:52027400-52029200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr15:52027400-52029400	Flanking Active TSS	Primary B cells from cord blood	blood
12	chr15:52027600-52029000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
13	chr15:52027800-52029000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr15:52027800-52029200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
15	chr15:52027800-52029200	Flanking Active TSS	Brain Anterior Caudate	brain
16	chr15:52027800-52029400	Flanking Active TSS	Primary hematopoietic stem cells	blood
17	chr15:52027800-52029400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
18	chr15:52028000-52029000	Flanking Active TSS	Brain Hippocampus Middle	brain
19	chr15:52028000-52029000	Enhancers	Spleen	Spleen
20	chr15:52028000-52029200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
21	chr15:52028000-52029200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
22	chr15:52028000-52029200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
23	chr15:52028000-52029200	Flanking Active TSS	Duodenum Mucosa	Duodenum
24	chr15:52028000-52029200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
25	chr15:52028000-52029400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
26	chr15:52028200-52029000	Flanking Active TSS	Primary B cells from peripheral blood	blood
27	chr15:52028200-52029000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
28	chr15:52028200-52029200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
29	chr15:52028200-52029400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
30	chr15:52028400-52029000	Flanking Active TSS	Brain Angular Gyrus	brain
31	chr15:52028400-52029000	Enhancers	Gastric	stomach
32	chr15:52028400-52029000	Enhancers	Small Intestine	intestine
33	chr15:52028400-52029000	Enhancers	Stomach Mucosa	stomach
34	chr15:52028400-52029200	Flanking Active TSS	Liver	Liver
35	chr15:52028400-52029200	Flanking Active TSS	Fetal Brain Male	brain
36	chr15:52028400-52029200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
37	chr15:52028400-52029200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
38	chr15:52028400-52029200	Flanking Active TSS	Stomach Smooth Muscle	stomach
39	chr15:52028400-52029200	Flanking Active TSS	Thymus	Thymus
40	chr15:52028400-52029200	Flanking Active TSS	Hela-S3	cervix
41	chr15:52028400-52029400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr15:52028400-52029400	Flanking Active TSS	Fetal Thymus	thymus
43	chr15:52028400-52030000	Active TSS	Colonic Mucosa	Colon
44	chr15:52028400-52030200	Active TSS	Fetal Brain Female	brain
45	chr15:52028400-52030200	Active TSS	GM12878-XiMat	blood
46	chr15:52028600-52029000	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr15:52028600-52029000	Flanking Active TSS	Aorta	Aorta
48	chr15:52028600-52029000	Enhancers	Brain Germinal Matrix	brain
49	chr15:52028600-52029000	Active TSS	Fetal Muscle Leg	muscle
50	chr15:52028600-52029000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links