Variant report

Variant	rs181795423
Chromosome Location	chr7:97501354-97501355
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:97500925-97502049	K562	blood:	n/a	n/a
2	POLR2A	chr7:97501312-97501868	GM12891	blood:	n/a	n/a
3	CREB1	chr7:97501207-97502061	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr7:97500930-97502205	PANC-1	pancreas:	n/a	n/a
5	EBF1	chr7:97501351-97501840	GM12878	blood:	n/a	chr7:97501595-97501606
6	MXI1	chr7:97500784-97501973	Hela-S3	cervix:	n/a	n/a
7	POLR2A	chr7:97501202-97502260	SK-N-MC	brain:	n/a	n/a
8	SIN3AK20	chr7:97501042-97502094	SK-N-SH	brain:	n/a	n/a
9	ZBTB7A	chr7:97501327-97501589	K562	blood:	n/a	n/a
10	HCFC1	chr7:97500916-97502198	Hela-S3	cervix:	n/a	n/a
11	EP300	chr7:97501101-97502147	ECC-1	luminal epithelium:	n/a	chr7:97501620-97501636 chr7:97501808-97501824
12	POLR2A	chr7:97501244-97501938	GM12892	blood:	n/a	n/a
13	ATF2	chr7:97501307-97501988	GM12878	blood:	n/a	n/a
14	CEBPB	chr7:97501282-97502047	K562	blood:	n/a	n/a
15	POLR2A	chr7:97501162-97502012	MCF-7	breast:	n/a	n/a
16	ZMIZ1	chr7:97501212-97502110	K562	blood:	n/a	n/a
17	MAX	chr7:97500869-97502084	K562	blood:	n/a	chr7:97501150-97501160 chr7:97501489-97501499
18	MAX	chr7:97500975-97502012	HepG2	liver:	n/a	chr7:97501150-97501160 chr7:97501489-97501499
19	E2F4	chr7:97501332-97502090	MCF10A-Er-Src	breast:	n/a	chr7:97501524-97501534
20	SIN3AK20	chr7:97500986-97501980	H1-hESC	embryonic stem cell:	n/a	n/a
21	POLR2A	chr7:97501022-97502055	ECC-1	luminal epithelium:	n/a	n/a
22	ATF2	chr7:97501053-97501801	H1-hESC	embryonic stem cell:	n/a	n/a
23	MAX	chr7:97500970-97502097	A549	lung:	n/a	chr7:97501150-97501160 chr7:97501489-97501499
24	CTCF	chr7:97501340-97501490	AG04449	skin:	n/a	n/a
25	SP1	chr7:97501350-97502029	A549	lung:	n/a	chr7:97501839-97501848 chr7:97501815-97501827 chr7:97501816-97501825 chr7:97501816-97501826 chr7:97501489-97501498 chr7:97501489-97501499 chr7:97501816-97501826 chr7:97501488-97501500 chr7:97501817-97501826 chr7:97501817-97501826 chr7:97501490-97501499 chr7:97501488-97501500 chr7:97501815-97501827
26	CHD2	chr7:97501243-97501965	GM12878	blood:	n/a	chr7:97501623-97501633
27	CTCF	chr7:97501320-97501470	HEK293	kidney:	n/a	n/a
28	ZNF384	chr7:97501278-97502117	K562	blood:	n/a	n/a
29	MBD4	chr7:97501320-97502003	HepG2	liver:	n/a	n/a
30	SIN3AK20	chr7:97501307-97501816	A549	lung:	n/a	n/a
31	ETS1	chr7:97501120-97501951	K562	blood:	n/a	chr7:97501864-97501875
32	SIN3AK20	chr7:97500906-97501889	K562	blood:	n/a	n/a
33	POLR2A	chr7:97500994-97502038	H1-hESC	embryonic stem cell:	n/a	n/a
34	HEY1	chr7:97501053-97502053	K562	blood:	n/a	n/a
35	MAX	chr7:97500707-97501996	K562	blood:	n/a	chr7:97501150-97501160 chr7:97501489-97501499
36	IRF1	chr7:97501243-97502069	K562	blood:	n/a	chr7:97501815-97501829 chr7:97501778-97501785 chr7:97501486-97501500
37	CCNT2	chr7:97500981-97501998	K562	blood:	n/a	chr7:97501816-97501825
38	POLR2A	chr7:97501286-97501835	GM12891	blood:	n/a	n/a
39	POLR2A	chr7:97501004-97502131	K562	blood:	n/a	n/a
40	REST	chr7:97500756-97502281	H1-neurons	neurons:	n/a	chr7:97501410-97501428 chr7:97501591-97501604
41	TAF1	chr7:97501197-97502025	ECC-1	luminal epithelium:	n/a	n/a
42	SIN3AK20	chr7:97500988-97502300	MCF-7	breast:	n/a	n/a
43	POU2F2	chr7:97501331-97501718	GM12878	blood:	n/a	n/a
44	JUND	chr7:97501074-97502099	K562	blood:	n/a	n/a
45	EP300	chr7:97500840-97502132	K562	blood:	n/a	chr7:97501620-97501636 chr7:97501808-97501824
46	POLR2A	chr7:97501197-97501877	HUVEC	blood vessel:	n/a	n/a
47	EP300	chr7:97501351-97502019	H1-hESC	embryonic stem cell:	n/a	chr7:97501620-97501636 chr7:97501808-97501824
48	POLR2A	chr7:97501108-97501963	GM10847	blood:	n/a	n/a
49	GABPA	chr7:97500940-97502158	MCF-7	breast:	n/a	n/a
50	POU2F2	chr7:97501307-97501921	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:97499747..97502097-chr7:97599134..97602634,6	MCF-7	breast:
2	chr7:97499263..97502446-chr7:97599755..97603082,5	K562	blood:
3	chr7:97498933..97501538-chr7:115850035..115852126,2	K562	blood:
4	chr7:97499971..97501829-chr7:97601279..97602819,2	MCF-7	breast:
5	chr7:97496316..97498581-chr7:97499278..97501918,3	MCF-7	breast:
6	chr7:97501305..97502999-chr7:98028998..98030520,2	K562	blood:
7	chr7:97499263..97501796-chr7:97600194..97603082,4	K562	blood:

Variant related genes	Relation type
ASNS	TF binding region
ENSG00000135269	Chromatin interaction
ENSG00000006453	Chromatin interaction
ENSG00000070669	Chromatin interaction
ENSG00000243554	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv428178	chr7:97402756-97648029	Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2758124	chr7:97476284-97648029	Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2759546	chr7:97476284-97648029	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv981552	chr7:97500692-97502806	Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:97500000-97502200	Active TSS	H1 Cell Line	embryonic stem cell
2	chr7:97500000-97502400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:97500200-97502000	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr7:97500200-97502000	Active TSS	NHEK	skin
5	chr7:97500200-97502200	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr7:97500200-97502200	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr7:97500400-97501400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:97500400-97502000	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr7:97500400-97502000	Active TSS	Brain Angular Gyrus	brain
10	chr7:97500400-97502200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:97500400-97502200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:97500400-97502200	Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr7:97500400-97502200	Active TSS	HSMMtube	muscle
14	chr7:97500400-97502400	Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr7:97500400-97502400	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr7:97500400-97502400	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr7:97500600-97501400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr7:97500600-97501800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr7:97500600-97502000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
20	chr7:97500600-97502000	Active TSS	Brain Cingulate Gyrus	brain
21	chr7:97500600-97502000	Active TSS	Stomach Smooth Muscle	stomach
22	chr7:97500600-97502000	Active TSS	A549	lung
23	chr7:97500600-97502000	Active TSS	Hela-S3	cervix
24	chr7:97500600-97502000	Active TSS	HSMM	muscle
25	chr7:97500600-97502200	Active TSS	H9 Cell Line	embryonic stem cell
26	chr7:97500600-97502200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr7:97500600-97502200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr7:97500600-97502200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr7:97500600-97502200	Active TSS	NHLF	lung
30	chr7:97500600-97502400	Active TSS	iPS-15b Cell Line	embryonic stem cell
31	chr7:97500600-97502400	Active TSS	Colon Smooth Muscle	Colon
32	chr7:97500800-97501400	Flanking Active TSS	Primary T cells from cord blood	blood
33	chr7:97500800-97501400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr7:97500800-97501400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
35	chr7:97500800-97501600	Flanking Active TSS	Primary B cells from cord blood	blood
36	chr7:97500800-97501600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
37	chr7:97500800-97501600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
38	chr7:97500800-97501800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr7:97500800-97501800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr7:97500800-97501800	Active TSS	HepG2	liver
41	chr7:97500800-97502000	Active TSS	iPS-18 Cell Line	embryonic stem cell
42	chr7:97500800-97502000	Active TSS	Primary T helper cells PMA-I stimulated	--
43	chr7:97500800-97502000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr7:97500800-97502000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
45	chr7:97500800-97502000	Active TSS	Rectal Mucosa Donor 29	rectum
46	chr7:97500800-97502000	Active TSS	K562	blood
47	chr7:97500800-97502200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr7:97500800-97502200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr7:97500800-97502200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
50	chr7:97500800-97502200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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