Variant report

Variant	rs181826164
Chromosome Location	chr7:121951054-121951055
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr7:121950629-121951065	H1-hESC	embryonic stem cell:	n/a	n/a
2	CTBP2	chr7:121950185-121951225	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr7:121949496-121954156	SK-N-MC	brain:	n/a	n/a
4	JUN	chr7:121950769-121951188	H1-hESC	embryonic stem cell:	n/a	n/a
5	YY1	chr7:121950585-121951055	H1-hESC	embryonic stem cell:	n/a	chr7:121950655-121950669 chr7:121950652-121950666
6	POLR2A	chr7:121950731-121951868	SK-N-MC	brain:	n/a	n/a
7	POLR2A	chr7:121950205-121951238	H1-hESC	embryonic stem cell:	n/a	n/a
8	RAD21	chr7:121950285-121951060	H1-hESC	embryonic stem cell:	n/a	chr7:121950336-121950346 chr7:121950342-121950355
9	MXI1	chr7:121950412-121951166	H1-hESC	embryonic stem cell:	n/a	n/a
10	CHD1	chr7:121950056-121951096	H1-hESC	embryonic stem cell:	n/a	n/a
11	MAX	chr7:121950428-121951107	H1-hESC	embryonic stem cell:	n/a	n/a
12	MAX	chr7:121950598-121951073	H1-hESC	embryonic stem cell:	n/a	n/a
13	CTCF	chr7:121950804-121951072	H1-hESC	embryonic stem cell:	n/a	chr7:121950889-121950905
14	SIN3A	chr7:121948850-121951494	H1-hESC	embryonic stem cell:	n/a	n/a
15	RAD21	chr7:121950130-121951108	H1-hESC	embryonic stem cell:	n/a	chr7:121950336-121950346 chr7:121950342-121950355
16	YY1	chr7:121950563-121951752	H1-hESC	embryonic stem cell:	n/a	chr7:121950655-121950669 chr7:121950652-121950666

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:121944178..121945755-chr7:121949719..121951349,2	MCF-7	breast:

Variant related genes	Relation type
FEZF1	TF binding region
ENSG00000230316	Chromatin interaction
ENSG00000128610	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5931	chr7:121944137-121988594	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv971144	chr7:121950027-121953468	Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121947400-121951200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:121949400-121952200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
3	chr7:121949800-121951200	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:121950000-121952200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
5	chr7:121950000-121952200	Active TSS	H9 Cell Line	embryonic stem cell
6	chr7:121950000-121952200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
7	chr7:121950000-121952400	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:121950200-121951600	Bivalent Enhancer	Stomach Mucosa	stomach
9	chr7:121950200-121952200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
10	chr7:121950200-121952200	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr7:121950400-121952000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr7:121950400-121952200	Bivalent Enhancer	Spleen	Spleen
13	chr7:121950800-121951200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
14	chr7:121950800-121951200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
15	chr7:121950800-121951200	Enhancers	Pancreas	Pancrea
16	chr7:121950800-121952400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr7:121951000-121951200	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr7:121951000-121951200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
19	chr7:121951000-121951200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr7:121951000-121951200	Enhancers	Right Atrium	heart
21	chr7:121951000-121951400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:121951000-121951400	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr7:121951000-121951400	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
24	chr7:121951000-121951600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr7:121951000-121951600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr7:121951000-121951600	Bivalent Enhancer	Duodenum Mucosa	Duodenum
27	chr7:121951000-121951600	Weak transcription	Gastric	stomach
28	chr7:121951000-121951800	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr7:121951000-121951800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
30	chr7:121951000-121951800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr7:121951000-121951800	Enhancers	Ovary	ovary
32	chr7:121951000-121951800	Active TSS	Right Ventricle	heart
33	chr7:121951000-121951800	Bivalent Enhancer	HepG2	liver
34	chr7:121951000-121952000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr7:121951000-121952200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
36	chr7:121951000-121952200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
37	chr7:121951000-121952200	Bivalent Enhancer	Fetal Muscle Leg	muscle
38	chr7:121951000-121952400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
39	chr7:121951000-121952400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
40	chr7:121951000-121952600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell

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