Variant report

Variant	rs181860882
Chromosome Location	chr1:227620545-227620546
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:227615748..227618335-chr1:227618739..227621470,2	MCF-7	breast:
2	chr1:227612197..227614219-chr1:227619414..227621480,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000242757	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534002	chr1:227315186-228047108	Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	nsv1001353	chr1:227474785-227660691	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1003278	chr1:227563126-227678464	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv945336	chr1:227620230-227622798	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:227615200-227621000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr1:227615400-227623400	Enhancers	Brain Cingulate Gyrus	brain
3	chr1:227615600-227621000	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr1:227616000-227622200	Enhancers	Fetal Muscle Leg	muscle
5	chr1:227616400-227621000	Enhancers	Lung	lung
6	chr1:227616600-227625200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr1:227617400-227620800	Weak transcription	Spleen	Spleen
8	chr1:227617400-227625200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr1:227617600-227621400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr1:227617600-227624000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:227617600-227624400	Weak transcription	Fetal Lung	lung
12	chr1:227617600-227625200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr1:227617600-227625200	Weak transcription	Fetal Intestine Small	intestine
14	chr1:227617600-227631200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr1:227617800-227625200	Weak transcription	Fetal Kidney	kidney
16	chr1:227617800-227625200	Weak transcription	Psoas Muscle	Psoas
17	chr1:227617800-227625200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr1:227617800-227625200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr1:227618000-227624600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr1:227618000-227625200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr1:227618200-227620600	Enhancers	HUVEC	blood vessel
22	chr1:227618600-227625200	Weak transcription	Left Ventricle	heart
23	chr1:227619000-227620800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:227619200-227620600	Weak transcription	Brain Substantia Nigra	brain
25	chr1:227619400-227621600	Weak transcription	Brain Angular Gyrus	brain
26	chr1:227619600-227625200	Weak transcription	Right Ventricle	heart
27	chr1:227619600-227625400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr1:227619600-227628800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr1:227619800-227620600	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr1:227619800-227620800	Enhancers	Brain Anterior Caudate	brain
31	chr1:227619800-227620800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr1:227619800-227624400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr1:227619800-227625200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr1:227619800-227625200	Enhancers	Brain Hippocampus Middle	brain
35	chr1:227619800-227625200	Weak transcription	Colon Smooth Muscle	Colon
36	chr1:227619800-227625200	Weak transcription	Ovary	ovary
37	chr1:227619800-227625400	Weak transcription	HSMMtube	muscle
38	chr1:227620000-227620600	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr1:227620000-227620600	Enhancers	A549	lung
40	chr1:227620000-227621400	Weak transcription	Fetal Brain Male	brain
41	chr1:227620000-227622200	Enhancers	K562	blood
42	chr1:227620000-227623800	Weak transcription	Adipose Nuclei	Adipose
43	chr1:227620000-227624400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr1:227620000-227624800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr1:227620000-227625200	Weak transcription	Fetal Intestine Large	intestine
46	chr1:227620000-227625200	Weak transcription	Right Atrium	heart
47	chr1:227620200-227621600	Weak transcription	Fetal Stomach	stomach
48	chr1:227620200-227625200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr1:227620400-227620800	Weak transcription	Stomach Mucosa	stomach
50	chr1:227620400-227625200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links