Variant report

Variant	rs181946098
Chromosome Location	chr15:74291045-74291046
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:74286936-74291631	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74276152..74278081-chr15:74290806..74293651,2	K562	blood:
2	chr15:74286840..74288514-chr15:74288531..74291100,2	MCF-7	breast:

Variant related genes	Relation type
STOML1	TF binding region
ENSG00000067221	Chromatin interaction
ENSG00000140464	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv833052	chr15:74250378-74377150	Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv518316	chr15:74290993-74331083	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74288200-74301800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:74288200-74303000	Weak transcription	A549	lung
3	chr15:74288200-74303800	Weak transcription	Brain Angular Gyrus	brain
4	chr15:74288200-74331000	Weak transcription	Fetal Heart	heart
5	chr15:74289600-74302400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr15:74289800-74291400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr15:74289800-74291600	Weak transcription	Fetal Brain Male	brain
8	chr15:74289800-74292000	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:74289800-74292000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
10	chr15:74289800-74293000	Genic enhancers	Primary T cells fromperipheralblood	blood
11	chr15:74289800-74296000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
12	chr15:74289800-74303200	Weak transcription	Brain Substantia Nigra	brain
13	chr15:74289800-74331000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr15:74290000-74291200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr15:74290000-74291200	Enhancers	Right Atrium	heart
16	chr15:74290000-74291200	Genic enhancers	Spleen	Spleen
17	chr15:74290000-74291400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
18	chr15:74290000-74291400	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr15:74290000-74291600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr15:74290000-74291600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
21	chr15:74290000-74292000	Genic enhancers	Primary T cells from cord blood	blood
22	chr15:74290000-74292000	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
23	chr15:74290000-74295200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:74290000-74299000	Weak transcription	Stomach Mucosa	stomach
25	chr15:74290000-74303400	Weak transcription	Fetal Kidney	kidney
26	chr15:74290000-74314800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr15:74290200-74291200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr15:74290200-74291200	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr15:74290200-74291400	Strong transcription	Placenta Amnion	Placenta Amnion
30	chr15:74290200-74291600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr15:74290200-74291600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr15:74290200-74292000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr15:74290200-74292000	Genic enhancers	Primary B cells from cord blood	blood
34	chr15:74290200-74292000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr15:74290200-74292000	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr15:74290200-74292000	Strong transcription	Fetal Brain Female	brain
37	chr15:74290200-74292000	Strong transcription	HSMMtube	muscle
38	chr15:74290200-74292000	Strong transcription	NH-A	brain
39	chr15:74290200-74292400	Genic enhancers	Primary hematopoietic stem cells	blood
40	chr15:74290200-74292800	Genic enhancers	Primary B cells from peripheral blood	blood
41	chr15:74290200-74293000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr15:74290200-74293400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr15:74290200-74298200	Weak transcription	HepG2	liver
44	chr15:74290400-74291200	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr15:74290400-74291200	Genic enhancers	Brain Germinal Matrix	brain
46	chr15:74290400-74291400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr15:74290400-74291400	Strong transcription	K562	blood
48	chr15:74290400-74291600	Strong transcription	Fetal Stomach	stomach
49	chr15:74290400-74291800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr15:74290400-74291800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links