Variant report

Variant	rs181972600
Chromosome Location	chrX:55172638-55172639
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:55172107..55173217-chrX:55185088..55186125,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM104B-1	chrX:55172614-55172744	NONHSAT137240

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv6551	chrX:55172471-55185657	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
2	esv2263886	chrX:55172549-55185643	Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	esv8458	chrX:55172571-55187606	Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
4	esv2409223	chrX:55172597-55185666	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	esv3372451	chrX:55172609-55185644	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:55167600-55187000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chrX:55169400-55175400	Weak transcription	Fetal Intestine Large	intestine
3	chrX:55169400-55186600	Weak transcription	Fetal Intestine Small	intestine
4	chrX:55169400-55186800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chrX:55170800-55186200	Weak transcription	A549	lung
6	chrX:55171400-55186800	Weak transcription	Stomach Mucosa	stomach
7	chrX:55172200-55172800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
8	chrX:55172400-55172800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
9	chrX:55172400-55172800	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chrX:55172400-55172800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chrX:55172400-55172800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chrX:55172400-55172800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chrX:55172400-55172800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
14	chrX:55172400-55172800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chrX:55172400-55172800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
16	chrX:55172400-55172800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
17	chrX:55172400-55172800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
18	chrX:55172400-55172800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
19	chrX:55172400-55172800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
20	chrX:55172400-55172800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
21	chrX:55172400-55172800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chrX:55172400-55172800	ZNF genes & repeats	Primary B cells from cord blood	blood
23	chrX:55172400-55172800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
24	chrX:55172400-55172800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
25	chrX:55172400-55172800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
26	chrX:55172400-55172800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
27	chrX:55172400-55172800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
28	chrX:55172400-55172800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
29	chrX:55172400-55172800	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
30	chrX:55172400-55172800	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
31	chrX:55172400-55172800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chrX:55172400-55172800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chrX:55172400-55172800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chrX:55172400-55172800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
35	chrX:55172400-55172800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
36	chrX:55172400-55172800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chrX:55172400-55172800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chrX:55172400-55172800	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
39	chrX:55172400-55172800	ZNF genes & repeats	Aorta	Aorta
40	chrX:55172400-55172800	ZNF genes & repeats	Liver	Liver
41	chrX:55172400-55172800	ZNF genes & repeats	Brain Angular Gyrus	brain
42	chrX:55172400-55172800	ZNF genes & repeats	Brain Anterior Caudate	brain
43	chrX:55172400-55172800	ZNF genes & repeats	Brain Cingulate Gyrus	brain
44	chrX:55172400-55172800	ZNF genes & repeats	Brain Hippocampus Middle	brain
45	chrX:55172400-55172800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
46	chrX:55172400-55172800	ZNF genes & repeats	Brain Substantia Nigra	brain
47	chrX:55172400-55172800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
48	chrX:55172400-55172800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
49	chrX:55172400-55172800	ZNF genes & repeats	Esophagus	oesophagus
50	chrX:55172400-55172800	Flanking Bivalent TSS/Enh	Fetal Kidney	kidney

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