Variant report

Variant	rs181979903
Chromosome Location	chr21:40839062-40839063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059868	chr21:40711535-41043291	Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1061454	chr21:40757973-41265404	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1062088	chr21:40838027-40919253	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40824000-40852400	Weak transcription	Pancreas	Pancrea
2	chr21:40825000-40847800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr21:40826600-40849800	Weak transcription	HSMMtube	muscle
4	chr21:40827400-40879800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr21:40828200-40839600	Weak transcription	Fetal Muscle Leg	muscle
6	chr21:40828600-40847400	Weak transcription	Brain Substantia Nigra	brain
7	chr21:40828800-40847600	Weak transcription	Brain Angular Gyrus	brain
8	chr21:40828800-40847600	Weak transcription	Brain Anterior Caudate	brain
9	chr21:40829800-40856200	Weak transcription	Aorta	Aorta
10	chr21:40830200-40849800	Weak transcription	Primary T cells from cord blood	blood
11	chr21:40832200-40839600	Weak transcription	Psoas Muscle	Psoas
12	chr21:40833000-40847200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr21:40835400-40840600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr21:40835600-40851000	Weak transcription	Ovary	ovary
15	chr21:40835800-40847800	Weak transcription	Left Ventricle	heart
16	chr21:40836200-40851000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr21:40836200-40852200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr21:40836400-40851400	Weak transcription	Brain Hippocampus Middle	brain
19	chr21:40836400-40894800	Weak transcription	Right Ventricle	heart
20	chr21:40836800-40839400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr21:40838800-40839200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr21:40838800-40839600	Weak transcription	Fetal Heart	heart
23	chr21:40838800-40849800	Weak transcription	Liver	Liver

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