Variant report

Variant	rs182090724
Chromosome Location	chr6:117773582-117773583
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:117771548..117773609-chr6:117923390..117926576,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000047932	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv521325	chr6:117772143-117776185	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117768200-117773600	Enhancers	HMEC	breast
2	chr6:117769600-117779400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:117769800-117773600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:117769800-117773600	Enhancers	HSMMtube	muscle
5	chr6:117770000-117773600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:117770000-117778000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:117771000-117773600	Enhancers	Fetal Intestine Large	intestine
8	chr6:117771200-117773600	Enhancers	A549	lung
9	chr6:117771200-117773600	Enhancers	Hela-S3	cervix
10	chr6:117771800-117773600	Enhancers	Fetal Intestine Small	intestine
11	chr6:117772600-117773600	Enhancers	HepG2	liver
12	chr6:117772600-117775400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:117772800-117773600	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr6:117772800-117773600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr6:117772800-117778000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:117773000-117773600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:117773000-117773600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:117773000-117773600	Enhancers	Placenta	Placenta
19	chr6:117773000-117773600	Enhancers	Fetal Stomach	stomach
20	chr6:117773000-117773600	Enhancers	Small Intestine	intestine
21	chr6:117773000-117778400	Weak transcription	Stomach Mucosa	stomach
22	chr6:117773200-117773600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:117773200-117773600	Bivalent Enhancer	Fetal Lung	lung
24	chr6:117773200-117777000	Weak transcription	Duodenum Mucosa	Duodenum

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