Variant report
| Variant | rs1821135 |
|---|---|
| Chromosome Location | chr2:168475394-168475395 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10177694 | 0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1079438 | 0.94[ASN][1000 genomes] |
| rs1079439 | 0.94[ASN][1000 genomes] |
| rs1079440 | 0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10930274 | 0.90[EUR][1000 genomes] |
| rs1227106 | 0.94[ASN][1000 genomes] |
| rs1227122 | 0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1235206 | 0.83[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1236836 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12612088 | 0.88[ASN][1000 genomes] |
| rs1367919 | 0.85[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1367921 | 0.83[EUR][1000 genomes] |
| rs1431901 | 0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1615054 | 0.81[EUR][1000 genomes] |
| rs1730726 | 0.94[ASN][1000 genomes] |
| rs1835746 | 0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1852903 | 0.94[AFR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1852904 | 0.93[ASN][1000 genomes] |
| rs2464039 | 0.82[EUR][1000 genomes] |
| rs4667958 | 0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4667959 | 0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6733068 | 0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs734283 | 0.93[ASN][1000 genomes] |
| rs734284 | 0.94[ASN][1000 genomes] |
| rs735424 | 0.94[ASN][1000 genomes] |
| rs891741 | 0.94[ASN][1000 genomes] |
| rs891742 | 0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv491872 | chr2:168220323-168737986 | ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv834449 | chr2:168340043-168511856 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv583592 | chr2:168356232-168721539 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv583594 | chr2:168461161-168597986 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:168464200-168476600 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 2 | chr2:168474200-168476200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
