Variant report

Variant	rs182117058
Chromosome Location	chr7:102779183-102779184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:102774358..102779744-chr7:102786583..102790988,10	MCF-7	breast:
2	chr7:102777940..102779618-chr7:102788620..102790971,2	MCF-7	breast:
3	chr7:102777685..102779366-chr7:102784071..102785694,2	K562	blood:

Variant related genes	Relation type
ENSG00000161048	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv831084	chr7:102778908-102964970	Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102747400-102781800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:102747600-102789200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:102760600-102782000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr7:102760600-102782200	Weak transcription	HSMM	muscle
5	chr7:102764000-102781800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr7:102764200-102787000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:102767200-102786000	Weak transcription	GM12878-XiMat	blood
8	chr7:102768800-102781800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:102768800-102782000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr7:102768800-102782000	Weak transcription	Pancreas	Pancrea
11	chr7:102768800-102786000	Weak transcription	Brain Germinal Matrix	brain
12	chr7:102768800-102786200	Weak transcription	Fetal Heart	heart
13	chr7:102768800-102786600	Weak transcription	Lung	lung
14	chr7:102768800-102788600	Weak transcription	Right Ventricle	heart
15	chr7:102769000-102781400	Weak transcription	Dnd41	blood
16	chr7:102769000-102782000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr7:102769000-102786000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:102769000-102786000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr7:102769000-102786000	Weak transcription	Fetal Brain Male	brain
20	chr7:102769000-102786600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr7:102769000-102786800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr7:102769000-102787000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr7:102769200-102781200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr7:102769200-102781800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr7:102769200-102781800	Weak transcription	Fetal Muscle Trunk	muscle
26	chr7:102769200-102781800	Weak transcription	Fetal Thymus	thymus
27	chr7:102769200-102786000	Weak transcription	Duodenum Mucosa	Duodenum
28	chr7:102769200-102786600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr7:102769200-102786800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr7:102769200-102787000	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr7:102769200-102787000	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr7:102769200-102787000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr7:102769200-102787200	Weak transcription	Adipose Nuclei	Adipose
34	chr7:102769200-102787800	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr7:102769200-102788200	Weak transcription	Primary B cells from cord blood	blood
36	chr7:102769200-102788400	Weak transcription	Thymus	Thymus
37	chr7:102770400-102781200	Weak transcription	Fetal Intestine Large	intestine
38	chr7:102770800-102781800	Weak transcription	Primary T cells from cord blood	blood
39	chr7:102771000-102786600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr7:102771000-102788800	Weak transcription	Small Intestine	intestine
41	chr7:102771200-102783000	Weak transcription	A549	lung
42	chr7:102771600-102784000	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr7:102772400-102781200	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr7:102772600-102781800	Weak transcription	Fetal Intestine Small	intestine
45	chr7:102772600-102781800	Weak transcription	Fetal Stomach	stomach
46	chr7:102774000-102782000	Weak transcription	Fetal Muscle Leg	muscle
47	chr7:102774000-102782600	Weak transcription	Spleen	Spleen
48	chr7:102774000-102783800	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr7:102774000-102788600	Weak transcription	HSMMtube	muscle
50	chr7:102774200-102781200	Weak transcription	K562	blood

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