Variant report

Variant	rs182120784
Chromosome Location	chr12:29935182-29935183
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529328	chr12:29692414-30246209	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv898953	chr12:29905322-29989292	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv826294	chr12:29934604-29940372	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29932400-29935200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr12:29932400-29935200	Weak transcription	Spleen	Spleen
3	chr12:29932800-29935200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:29933000-29937800	Active TSS	Aorta	Aorta
5	chr12:29933800-29937800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr12:29934000-29935200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
7	chr12:29934000-29935600	Flanking Active TSS	Adipose Nuclei	Adipose
8	chr12:29934000-29936400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
9	chr12:29934000-29937800	Active TSS	Duodenum Smooth Muscle	Duodenum
10	chr12:29934000-29937800	Active TSS	Fetal Kidney	kidney
11	chr12:29934000-29937800	Active TSS	NHLF	lung
12	chr12:29934000-29938000	Active TSS	Right Ventricle	heart
13	chr12:29934200-29935200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr12:29934200-29935400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr12:29934200-29935600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
16	chr12:29934200-29935800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr12:29934200-29937400	Active TSS	Lung	lung
18	chr12:29934200-29937600	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
19	chr12:29934200-29937600	Active TSS	Rectal Smooth Muscle	rectum
20	chr12:29934200-29937800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr12:29934400-29935200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
22	chr12:29934400-29935200	Flanking Active TSS	Fetal Heart	heart
23	chr12:29934400-29935400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
24	chr12:29934400-29935600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
25	chr12:29934400-29936400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
26	chr12:29934400-29937600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr12:29934400-29937600	Active TSS	Brain Inferior Temporal Lobe	brain
28	chr12:29934400-29937600	Bivalent/Poised TSS	Thymus	Thymus
29	chr12:29934400-29937800	Active TSS	Brain Anterior Caudate	brain
30	chr12:29934400-29937800	Active TSS	Brain Hippocampus Middle	brain
31	chr12:29934400-29937800	Active TSS	Fetal Brain Female	brain
32	chr12:29934600-29935200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr12:29934600-29936600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr12:29934600-29937400	Active TSS	Pancreatic Islets	Pancreatic Islet
35	chr12:29934600-29937800	Active TSS	Right Atrium	heart
36	chr12:29934600-29937800	Active TSS	Stomach Smooth Muscle	stomach
37	chr12:29934800-29935200	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
38	chr12:29934800-29935200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
39	chr12:29934800-29935200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr12:29934800-29935200	Enhancers	Liver	Liver
41	chr12:29934800-29935200	Bivalent Enhancer	Fetal Intestine Large	intestine
42	chr12:29934800-29935200	Bivalent Enhancer	HUVEC	blood vessel
43	chr12:29934800-29935200	Flanking Active TSS	NHDF-Ad	bronchial
44	chr12:29934800-29935400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr12:29934800-29935400	Active TSS	Brain Germinal Matrix	brain
46	chr12:29934800-29935400	Active TSS	Rectal Mucosa Donor 29	rectum
47	chr12:29934800-29935400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
48	chr12:29934800-29935400	Flanking Active TSS	Osteobl	bone
49	chr12:29934800-29935600	Active TSS	Fetal Muscle Trunk	muscle
50	chr12:29934800-29936600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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