Variant report

Variant	rs182135748
Chromosome Location	chr15:41807008-41807009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:41806968-41807023	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
LTK	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524476	chr15:41689232-41820200	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv904110	chr15:41776692-41813279	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv471241	chr15:41783814-41820200	Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv904112	chr15:41806658-41836234	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41801800-41819000	Weak transcription	Hela-S3	cervix
2	chr15:41805200-41809200	Weak transcription	A549	lung
3	chr15:41806000-41809400	Weak transcription	Brain Angular Gyrus	brain
4	chr15:41806200-41808600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr15:41806200-41809000	Weak transcription	Ovary	ovary
6	chr15:41806200-41809200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr15:41806200-41809200	Weak transcription	Left Ventricle	heart
8	chr15:41806200-41809600	Weak transcription	Colon Smooth Muscle	Colon
9	chr15:41806200-41809600	Weak transcription	Pancreas	Pancrea
10	chr15:41806200-41809600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr15:41806200-41809600	Weak transcription	HMEC	breast
12	chr15:41806200-41815400	Weak transcription	NHDF-Ad	bronchial
13	chr15:41806200-41820400	Weak transcription	HSMM	muscle
14	chr15:41806200-41822600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:41806400-41807200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr15:41806400-41808200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:41806400-41808600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr15:41806400-41808600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr15:41806400-41808800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:41806400-41808800	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr15:41806400-41808800	Weak transcription	Fetal Intestine Small	intestine
22	chr15:41806400-41809000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr15:41806400-41809000	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr15:41806400-41809000	Weak transcription	Placenta	Placenta
25	chr15:41806400-41809000	Weak transcription	NHEK	skin
26	chr15:41806400-41809200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:41806400-41809200	Weak transcription	NHLF	lung
28	chr15:41806400-41809400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr15:41806400-41809400	Weak transcription	Adipose Nuclei	Adipose
30	chr15:41806400-41809400	Weak transcription	Brain Anterior Caudate	brain
31	chr15:41806400-41809400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr15:41806400-41809400	Weak transcription	Fetal Intestine Large	intestine
33	chr15:41806400-41809400	Weak transcription	Fetal Muscle Trunk	muscle
34	chr15:41806400-41809400	Weak transcription	Psoas Muscle	Psoas
35	chr15:41806400-41809400	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr15:41806400-41809400	Weak transcription	HSMMtube	muscle
37	chr15:41806400-41809600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr15:41806400-41809600	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr15:41806400-41809600	Weak transcription	Esophagus	oesophagus
40	chr15:41806400-41809600	Weak transcription	Lung	lung
41	chr15:41806400-41809600	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr15:41806400-41812400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr15:41806400-41812800	Weak transcription	Colonic Mucosa	Colon
44	chr15:41806400-41815600	Weak transcription	Rectal Smooth Muscle	rectum
45	chr15:41806400-41818600	Weak transcription	Primary B cells from cord blood	blood
46	chr15:41806400-41835200	Weak transcription	Right Atrium	heart
47	chr15:41806600-41808200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr15:41806600-41808800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr15:41806600-41809000	Weak transcription	Right Ventricle	heart
50	chr15:41806600-41809200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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