Variant report

Variant	rs182190904
Chromosome Location	chr15:75444335-75444336
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75441576..75444367-chr15:75445715..75448698,2	K562	blood:
2	chr15:75316439..75318954-chr15:75442453..75445329,2	K562	blood:
3	chr15:75440695..75447245-chr15:75492805..75496623,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167173	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv457205	chr15:75336729-75447773	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv569994	chr15:75336729-75447773	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv904383	chr15:75382542-75520378	Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	esv1796196	chr15:75389382-75531124	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
7	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
8	nsv1053212	chr15:75428467-75534408	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
9	esv3424579	chr15:75443850-75444374	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75438400-75445400	Weak transcription	Adipose Nuclei	Adipose
2	chr15:75438600-75448600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:75442000-75445400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr15:75442000-75445800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr15:75442200-75446000	Enhancers	K562	blood
6	chr15:75442400-75445600	Enhancers	GM12878-XiMat	blood
7	chr15:75442800-75445000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr15:75442800-75445400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr15:75443000-75444600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:75443000-75445600	Weak transcription	A549	lung
11	chr15:75443000-75445800	Enhancers	Hela-S3	cervix
12	chr15:75443200-75444800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:75443600-75444400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:75443600-75445200	Enhancers	HSMMtube	muscle
15	chr15:75443600-75447200	Enhancers	Placenta	Placenta
16	chr15:75443600-75448000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr15:75443600-75448400	Enhancers	Primary hematopoietic stem cells	blood
18	chr15:75443800-75444400	Enhancers	Left Ventricle	heart
19	chr15:75443800-75444600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:75443800-75444600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr15:75443800-75445200	Enhancers	Fetal Heart	heart
22	chr15:75443800-75445800	Enhancers	Fetal Muscle Leg	muscle
23	chr15:75443800-75447200	Enhancers	Fetal Muscle Trunk	muscle
24	chr15:75443800-75449400	Enhancers	Spleen	Spleen
25	chr15:75444000-75444400	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr15:75444000-75444600	Weak transcription	Ovary	ovary
27	chr15:75444000-75445400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr15:75444000-75445600	Weak transcription	HMEC	breast
29	chr15:75444000-75445600	Weak transcription	NHDF-Ad	bronchial
30	chr15:75444000-75449000	Weak transcription	Lung	lung
31	chr15:75444200-75444400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr15:75444200-75444400	Enhancers	Duodenum Mucosa	Duodenum
33	chr15:75444200-75444400	Enhancers	Stomach Smooth Muscle	stomach
34	chr15:75444200-75447800	Enhancers	HepG2	liver

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