Variant report

Variant	rs1821956
Chromosome Location	chr7:63498814-63498815
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF680-2	chr7:63498717-63498931	XLOC_006469
2	lnc-ZNF727-2	chr7:63498206-63499014	XLOC_006122

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10238001	0.83[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs10238781	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10250989	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs10257979	0.87[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs10282465	0.87[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs1036611	0.85[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs10807673	0.87[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs10807674	0.87[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs10949858	0.93[ASN][1000 genomes]
rs10949863	0.83[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs10949865	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10949866	0.85[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs11769287	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11979814	0.87[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs12668280	0.87[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs13227194	0.92[EUR][1000 genomes]
rs1347879	0.87[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs1595623	0.81[AMR][1000 genomes]
rs1814044	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1837334	0.97[ASN][1000 genomes]
rs1898827	0.85[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1946853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2011824	0.87[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2017683	0.81[AMR][1000 genomes]
rs2018367	0.97[ASN][1000 genomes]
rs2861504	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs4467830	0.87[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs4621679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4717966	0.87[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs4717967	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4717969	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6460105	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6460106	0.87[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs6460107	0.87[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs6949981	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6957535	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6959038	0.87[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs6959059	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6959359	0.89[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs6973547	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6973557	0.87[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs6973779	0.87[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs6975985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6979758	0.87[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7779829	0.87[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7783518	0.83[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7793587	0.87[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs7810753	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs981084	0.87[AFR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888255	chr7:63175168-63990100	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv888258	chr7:63294907-63537173	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv534361	chr7:63328472-63955286	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
4	nsv888259	chr7:63363001-64009193	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
5	esv3365963	chr7:63367092-63587809	Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	esv3496812	chr7:63367459-63649196	Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
7	esv3496813	chr7:63367459-63649196	Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
8	esv3336155	chr7:63368772-63650552	Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
9	nsv464514	chr7:63383123-63847894	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
10	nsv607304	chr7:63383123-63847894	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
11	nsv888260	chr7:63389550-63565953	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
12	nsv1016151	chr7:63420068-63704289	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
13	nsv1019447	chr7:63420068-63766444	Active TSS ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
14	nsv1016466	chr7:63438466-63969492	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
15	nsv966817	chr7:63449908-63505755	Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
16	nsv888263	chr7:63464342-63565953	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
17	esv3378509	chr7:63482728-63739475	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:63497000-63499000	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr7:63497200-63499000	ZNF genes & repeats	Aorta	Aorta
3	chr7:63498200-63499000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr7:63498400-63499000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:63498800-63499400	Weak transcription	Brain Inferior Temporal Lobe	brain

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