Variant report

Variant	rs182207753
Chromosome Location	chr22:31455549-31455550
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31363469..31366268-chr22:31450278..31456884,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133422	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9896	chr22:31369204-31513933	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv524366	chr22:31440703-31480069	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv829173	chr22:31450043-31543956	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv964620	chr22:31452981-31465140	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv962852	chr22:31455516-31465140	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31452000-31458000	Weak transcription	Adipose Nuclei	Adipose
2	chr22:31452200-31455600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr22:31452200-31455600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr22:31452200-31455600	Weak transcription	Ovary	ovary
5	chr22:31452200-31455800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr22:31452200-31455800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr22:31452200-31456000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr22:31452200-31456000	Weak transcription	NHEK	skin
9	chr22:31452800-31455600	Weak transcription	HMEC	breast
10	chr22:31452800-31456800	Weak transcription	Hela-S3	cervix
11	chr22:31452800-31458200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr22:31453000-31455600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr22:31453000-31455600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr22:31453000-31455600	Weak transcription	Placenta	Placenta
15	chr22:31453200-31455600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr22:31453200-31455600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr22:31453200-31455600	Weak transcription	Fetal Intestine Large	intestine
18	chr22:31453200-31455600	Weak transcription	Fetal Intestine Small	intestine
19	chr22:31453400-31455600	Weak transcription	Fetal Muscle Leg	muscle
20	chr22:31453400-31455600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr22:31453400-31455600	Weak transcription	HepG2	liver
22	chr22:31453400-31455800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr22:31453600-31455600	Weak transcription	A549	lung
24	chr22:31454400-31455600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr22:31454400-31455800	Weak transcription	Stomach Smooth Muscle	stomach
26	chr22:31454600-31455600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr22:31454600-31455600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr22:31455400-31455600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr22:31455400-31456200	Enhancers	Fetal Lung	lung
30	chr22:31455400-31456200	Enhancers	Fetal Stomach	stomach
31	chr22:31455400-31458400	Enhancers	K562	blood

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