Variant report

Variant	rs182208225
Chromosome Location	chr3:47055026-47055027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:47047312..47050228-chr3:47050509..47055807,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000160796	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876755	chr3:46895109-47061183	Genic enhancers Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3461834	chr3:46977730-47173228	Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv3461835	chr3:46977822-47173168	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	esv3461836	chr3:46977822-47173168	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv876756	chr3:47002931-47586514	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
6	nsv876757	chr3:47018214-47058057	Active TSS Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv997261	chr3:47054766-47133680	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47039800-47058000	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr3:47043800-47057800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:47045000-47057600	Weak transcription	HepG2	liver
4	chr3:47048600-47055800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:47049000-47055400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:47049800-47058200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr3:47050200-47058200	Weak transcription	Hela-S3	cervix
8	chr3:47050200-47059000	Weak transcription	A549	lung
9	chr3:47050200-47063800	Weak transcription	Stomach Mucosa	stomach
10	chr3:47050400-47057600	Weak transcription	K562	blood
11	chr3:47051200-47058400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr3:47051400-47055200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr3:47051400-47056800	Weak transcription	HMEC	breast
14	chr3:47051400-47056800	Weak transcription	NHEK	skin
15	chr3:47051400-47058200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr3:47051400-47064000	Weak transcription	Small Intestine	intestine
17	chr3:47051600-47055200	Weak transcription	Liver	Liver
18	chr3:47051600-47055400	Weak transcription	Fetal Kidney	kidney
19	chr3:47051600-47055600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr3:47051600-47057600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:47051600-47058200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr3:47051600-47058400	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr3:47051600-47058400	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr3:47051800-47055200	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr3:47051800-47055200	Enhancers	Fetal Thymus	thymus
26	chr3:47051800-47055400	Weak transcription	Primary T cells from cord blood	blood
27	chr3:47051800-47055600	Weak transcription	Brain Angular Gyrus	brain
28	chr3:47051800-47056800	Weak transcription	Aorta	Aorta
29	chr3:47051800-47056800	Weak transcription	Ovary	ovary
30	chr3:47051800-47057000	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr3:47051800-47060400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr3:47051800-47061600	Weak transcription	Right Atrium	heart
33	chr3:47051800-47062000	Weak transcription	Psoas Muscle	Psoas
34	chr3:47052000-47055200	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr3:47052000-47055200	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr3:47052000-47055200	Weak transcription	NH-A	brain
37	chr3:47052000-47055400	Weak transcription	GM12878-XiMat	blood
38	chr3:47052000-47055400	Weak transcription	NHLF	lung
39	chr3:47052000-47055600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr3:47052000-47055600	Weak transcription	Brain Substantia Nigra	brain
41	chr3:47052000-47055800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr3:47052000-47056400	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr3:47052000-47056600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr3:47052000-47056800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr3:47052000-47056800	Weak transcription	Fetal Lung	lung
46	chr3:47052000-47056800	Weak transcription	Rectal Smooth Muscle	rectum
47	chr3:47052000-47057000	Weak transcription	Colon Smooth Muscle	Colon
48	chr3:47052000-47057000	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr3:47052000-47057600	Weak transcription	NHDF-Ad	bronchial
50	chr3:47052000-47058000	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links