Variant report

Variant	rs182233638
Chromosome Location	chr11:76244745-76244746
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76242469..76244011-chr11:76244453..76247142,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv1848387	chr11:76243699-76262652	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76205200-76254400	Weak transcription	Aorta	Aorta
2	chr11:76205400-76254600	Weak transcription	Right Ventricle	heart
3	chr11:76205400-76255200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:76206000-76249200	Weak transcription	Colonic Mucosa	Colon
5	chr11:76207400-76254400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:76213000-76254200	Weak transcription	Fetal Heart	heart
7	chr11:76220000-76255600	Weak transcription	Small Intestine	intestine
8	chr11:76222200-76252800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:76222600-76249200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:76224200-76254600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:76224400-76262600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:76224400-76263800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:76224800-76251200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:76225400-76253200	Weak transcription	HSMMtube	muscle
15	chr11:76230000-76265600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr11:76232800-76245000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:76233000-76249200	Weak transcription	Fetal Stomach	stomach
18	chr11:76233600-76251000	Strong transcription	Primary B cells from cord blood	blood
19	chr11:76233600-76258800	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr11:76233800-76258600	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr11:76233800-76260200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr11:76233800-76262000	Strong transcription	Placenta	Placenta
23	chr11:76233800-76262400	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr11:76233800-76262600	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr11:76233800-76263200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr11:76234000-76245200	Strong transcription	Fetal Thymus	thymus
27	chr11:76234000-76245400	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr11:76234000-76262600	Strong transcription	Dnd41	blood
29	chr11:76234200-76250800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
30	chr11:76234200-76251200	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr11:76234200-76262000	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr11:76234600-76246400	Weak transcription	Fetal Brain Male	brain
33	chr11:76234800-76263000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr11:76236000-76247400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr11:76236000-76254400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr11:76236000-76254400	Weak transcription	Gastric	stomach
37	chr11:76236200-76248800	Weak transcription	Ovary	ovary
38	chr11:76236200-76249200	Weak transcription	Fetal Intestine Small	intestine
39	chr11:76236200-76249200	Weak transcription	Lung	lung
40	chr11:76236200-76249400	Weak transcription	Spleen	Spleen
41	chr11:76236200-76253200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr11:76236200-76254400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr11:76236200-76254400	Weak transcription	Pancreas	Pancrea
44	chr11:76236400-76245000	Weak transcription	NHLF	lung
45	chr11:76236400-76248800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:76236400-76250600	Weak transcription	Thymus	Thymus
47	chr11:76236400-76252600	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr11:76236400-76255400	Weak transcription	HMEC	breast
49	chr11:76236400-76255600	Weak transcription	Esophagus	oesophagus
50	chr11:76236400-76255600	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links