Variant report

Variant	rs182239855
Chromosome Location	chr11:73289480-73289481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr11:73289392-73290344	GM12878	blood:	n/a	n/a
2	NFIC	chr11:73289407-73290215	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73287100..73289867-chr11:73302120..73304102,3	K562	blood:

Variant related genes	Relation type
HMGN2P38	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv983188	chr11:73273934-73307064	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv975202	chr11:73289057-73294849	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73250000-73307800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr11:73253800-73307000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:73263200-73306000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:73266600-73307800	Weak transcription	Fetal Intestine Small	intestine
5	chr11:73272200-73307600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:73274800-73290800	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr11:73275400-73307000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr11:73276400-73289800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:73276400-73296800	Weak transcription	Fetal Muscle Leg	muscle
10	chr11:73276400-73299200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr11:73276400-73307000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr11:73277200-73299600	Weak transcription	Primary B cells from peripheral blood	blood
13	chr11:73277400-73307800	Weak transcription	Fetal Intestine Large	intestine
14	chr11:73277600-73293800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:73279400-73307000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr11:73279600-73291200	Weak transcription	Ovary	ovary
17	chr11:73280000-73289800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr11:73280000-73299400	Weak transcription	Fetal Stomach	stomach
19	chr11:73280600-73296200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr11:73281600-73307800	Weak transcription	Hela-S3	cervix
21	chr11:73281800-73295400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr11:73282000-73296800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:73282200-73296400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:73282200-73296600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:73282200-73297000	Weak transcription	HMEC	breast
26	chr11:73282200-73297200	Weak transcription	NH-A	brain
27	chr11:73282400-73293800	Weak transcription	HSMM	muscle
28	chr11:73285200-73292400	Weak transcription	Right Atrium	heart
29	chr11:73285200-73294600	Weak transcription	Right Ventricle	heart
30	chr11:73285200-73303600	Weak transcription	Left Ventricle	heart
31	chr11:73285200-73306600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:73285600-73289800	Weak transcription	Fetal Lung	lung
33	chr11:73285800-73289800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr11:73286000-73294800	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr11:73286200-73295000	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr11:73286800-73290200	Enhancers	Brain Germinal Matrix	brain
37	chr11:73286800-73307600	Weak transcription	Lung	lung
38	chr11:73287400-73290000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr11:73287800-73290000	Enhancers	Brain Hippocampus Middle	brain
40	chr11:73287800-73306200	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr11:73288000-73289600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr11:73288000-73289800	Weak transcription	Brain Angular Gyrus	brain
43	chr11:73288000-73290000	Enhancers	NHDF-Ad	bronchial
44	chr11:73288000-73290200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:73288000-73290200	Enhancers	NHLF	lung
46	chr11:73288000-73291200	Enhancers	Fetal Brain Male	brain
47	chr11:73288000-73306200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr11:73288200-73289600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr11:73288200-73293800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr11:73288400-73307800	Weak transcription	Aorta	Aorta

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