Variant report

Variant	rs182272065
Chromosome Location	chr20:29647739-29647740
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758518	chr20:29419570-29653908	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv2758791	chr20:29419570-29653908	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv428028	chr20:29419570-29653908	Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv428376	chr20:29419570-29653908	Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1058387	chr20:29479828-29651199	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv1067193	chr20:29525410-29651199	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	esv11674	chr20:29528011-29653880	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv965870	chr20:29570138-29652376	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	esv15335	chr20:29580700-29653880	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv585870	chr20:29603773-29648195	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv585871	chr20:29612406-29648195	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv585872	chr20:29612406-29648263	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv585873	chr20:29616742-29651821	ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv821487	chr20:29629343-29652652	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv828711	chr20:29629343-29652652	Weak transcription ZNF genes & repeats Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv585874	chr20:29633277-29651821	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	esv3401555	chr20:29644191-29653908	ZNF genes & repeats Weak transcription Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3388219	chr20:29644291-29653908	ZNF genes & repeats Weak transcription Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv8895	chr20:29647414-29648114	ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3447191	chr20:29647427-29647789	ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
21	esv3352865	chr20:29647709-29648132	ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:29645400-29647800	ZNF genes & repeats	Brain Substantia Nigra	brain
2	chr20:29645400-29648200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
3	chr20:29645400-29648400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
4	chr20:29645400-29648400	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr20:29645400-29648400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
6	chr20:29645400-29648400	ZNF genes & repeats	Fetal Heart	heart
7	chr20:29645400-29648400	ZNF genes & repeats	Fetal Kidney	kidney
8	chr20:29645400-29648600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
9	chr20:29645400-29649800	ZNF genes & repeats	Liver	Liver
10	chr20:29645400-29650600	ZNF genes & repeats	Adipose Nuclei	Adipose
11	chr20:29645400-29653800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr20:29645400-29653800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
13	chr20:29645400-29653800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
14	chr20:29645400-29653800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
15	chr20:29645400-29653800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
16	chr20:29645400-29653800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
17	chr20:29645400-29653800	ZNF genes & repeats	Primary T cells from cord blood	blood
18	chr20:29645400-29653800	ZNF genes & repeats	Fetal Brain Male	brain
19	chr20:29645400-29653800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
20	chr20:29645600-29648400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
21	chr20:29645600-29649400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
22	chr20:29645600-29650000	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr20:29645600-29653800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr20:29645600-29653800	ZNF genes & repeats	Fetal Lung	lung
25	chr20:29645800-29649400	ZNF genes & repeats	Aorta	Aorta
26	chr20:29645800-29653800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
27	chr20:29645800-29653800	ZNF genes & repeats	Psoas Muscle	Psoas
28	chr20:29646000-29649400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
29	chr20:29646000-29653800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
30	chr20:29646200-29648400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
31	chr20:29646200-29648400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
32	chr20:29646800-29648400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood

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